Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F20
         (398 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    27   3.5  
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta...    27   4.6  
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta...    27   4.6  
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta...    27   4.6  
At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /...    26   8.0  

>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 216  LKSLVTTSNSMRISRSSGLTRGCAGKRVLSLSTLMVPPV 332
            ++ L T S+  ++SRS+G   G +  RVL + + +  P+
Sbjct: 3298 VRELATLSSKQKMSRSTGSMAGASILRVLQVLSSLTSPI 3336


>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 396 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 274
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 396 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 274
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 422

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 396 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 274
           S +P A S W + P    L   P+   E  ++   CRR  +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227


>At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 [Glycine max] GI:5669846; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 373

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 360 LPVMGTLTIAPEVPSELIVRAPACRRTLELAHCSG 256
           L + G L IAPE P E       C + +E AH +G
Sbjct: 98  LSISGNL-IAPESPYEWKCNKDDCHQWIEFAHING 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,494,411
Number of Sequences: 28952
Number of extensions: 122374
Number of successful extensions: 299
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)