Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F19
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   156   1e-39
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   156   1e-39
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   3.4  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   4.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   4.5  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   4.5  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  156 bits (379), Expect = 1e-39
 Identities = 73/100 (73%), Positives = 82/100 (82%), Gaps = 1/100 (1%)
 Frame = +2

Query: 2   SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
           SKVIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W 
Sbjct: 31  SKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWV 90

Query: 182 N-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
           N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 91  NQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  156 bits (379), Expect = 1e-39
 Identities = 73/100 (73%), Positives = 82/100 (82%), Gaps = 1/100 (1%)
 Frame = +2

Query: 2   SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
           SKVIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF+V + DIE+W 
Sbjct: 31  SKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRFNVKLKDIEKWV 90

Query: 182 N-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
           N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 91  NQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 210  YPNCLDGSKFVHLSMSLIGTSKRGEMTPHLFSLPVRLTTILPALWS 73
            Y N    S+FV L    +    RGE    +++  V++   LP  W+
Sbjct: 2943 YFNSRQKSEFVTLKGKFLEKLNRGEEANQMYAAAVQIDLGLPKAWA 2988


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -1

Query: 207 PNCLDGSKFVHLSMSLIGTSKRGEMTPHLFSLPVRLTTILPALWSSTISNSPI*PCF 37
           PN ++       ++S   T +   ++P     P ++ T +P ++S     SPI P F
Sbjct: 596 PNAIETDSSPSDTISSSPTVRAVNLSPSKNQKPPKILTKIPDIFSKAGKKSPILPTF 652


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 332  LFYY--PNELGSTTGSMIWGLHVY 397
            +FYY  PN+ G  +G  +WG  +Y
Sbjct: 1070 VFYYDGPNKDGLASGHWVWGTTLY 1093


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 203 FGYLVLTTSGGIMDHEEARRKHLGGKIL 286
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,493
Number of Sequences: 5004
Number of extensions: 36881
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)