Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F19
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 175 1e-44
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 164 2e-41
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 107 4e-24
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 1e-04
11_01_0526 - 4140853-4141017,4141416-4141619 28 2.4
06_01_0853 + 6486027-6486158,6486561-6486692,6486974-6486978,648... 28 2.4
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899... 27 4.3
01_06_0507 - 29893563-29894470,29895227-29895419 27 4.3
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529... 27 5.6
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 5.6
07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487... 27 7.5
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 27 7.5
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 27 7.5
01_07_0350 + 42941976-42942401,42942510-42942737,42943201-429433... 27 7.5
12_02_0312 + 17395716-17398112 26 9.9
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 175 bits (426), Expect = 1e-44
Identities = 80/100 (80%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 31 SKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWT 90
Query: 182 -NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 91 ARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 164 bits (399), Expect = 2e-41
Identities = 77/96 (80%), Positives = 84/96 (87%), Gaps = 1/96 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 31 SKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIESWT 90
Query: 182 -NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 286
LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 91 ARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 107 bits (256), Expect = 4e-24
Identities = 46/99 (46%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERW- 178
S V+V FL +M GYI +FE++D HR GKI V L GR+ C ++ R D+ +IE++
Sbjct: 30 SGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTYRQDIRAKEIEQYR 89
Query: 179 TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 295
+LP+RQ+GY+V+TT G++DHEEA ++++GG++LG+F
Sbjct: 90 VRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 1e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 68 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 169
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 86 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>06_01_0853 +
6486027-6486158,6486561-6486692,6486974-6486978,
6487948-6488017,6489456-6489776
Length = 219
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 271 WRKNSRLLFLSLFNTSENTFFVLL 342
W+K +++LFL L N + T F +L
Sbjct: 18 WQKEAKILFLGLDNAGKTTLFYML 41
>08_01_0913 +
8995491-8995926,8995976-8997352,8997431-8998174,
8998402-8998748
Length = 967
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -1
Query: 204 NCLDGSKFVHLSMSLIGTSKRGEMTPHLFSLPVRLTTILPALWSSTISN 58
N LDG + +SL G K M + L V TTILP ++ ++SN
Sbjct: 118 NSLDGD----IPISLGGCPKLHAMNLSMNHLSVSATTILPVIFPKSLSN 162
>01_06_0507 - 29893563-29894470,29895227-29895419
Length = 366
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 169 REVDKLATVQTVWVPCSHNKWWHHGS*GSQKETSWRKNSRLL 294
RE ATV T W+ +WWH G + R+ RLL
Sbjct: 156 REHGATATVVTAWISW---RWWHQRLVGGDSTVAGRRLWRLL 194
>07_01_0702 +
5288588-5288889,5289257-5289407,5289543-5289725,
5290063-5290137,5290248-5290403,5290502-5290597,
5290855-5290985,5291057-5291138,5291237-5291586,
5293029-5293234,5293254-5293570
Length = 682
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 162 MTSRGGQTCYRPDSLGTLFSQQVVASWIMRKPEGNILEEK 281
+ R G + R D +G ++V SW+ R P ++LE K
Sbjct: 600 LAERAGCSADRNDRVGRSH-REVSTSWVKRNPGDHVLERK 638
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 86 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
>07_03_1420 +
26448009-26448085,26448302-26448394,26448634-26448727,
26448822-26448859,26448999-26449090,26449179-26449258,
26449332-26449388,26449420-26449449,26449505-26449597,
26449766-26449840,26449888-26449959
Length = 266
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 35 MKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 175
+++G+ +I D +R K + +LTG++ +C + FD + + E+
Sbjct: 25 LQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDRILKEDEK 71
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 11 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 175
++K LT ++ IG +EI +HR K+ L G L CGV +F + I++
Sbjct: 583 VIKVLTELLDQLDIGTYEIKLNHR--KL---LDGMLEICGVPPEKFRTVCSSIDK 632
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 198 LDGSKFVHLSMSLIGTSKRG 139
+DG + V L SLIGT+KRG
Sbjct: 196 VDGLREVELGNSLIGTTKRG 215
>01_07_0350 +
42941976-42942401,42942510-42942737,42943201-42943380,
42943515-42943730,42943854-42943955,42944377-42944439,
42944526-42944594,42945662-42945730,42947003-42947069,
42947449-42947514,42947600-42947697,42947820-42947857,
42947929-42948016,42948101-42948373,42948470-42948535,
42948624-42948779
Length = 734
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/50 (22%), Positives = 22/50 (44%)
Frame = -1
Query: 198 LDGSKFVHLSMSLIGTSKRGEMTPHLFSLPVRLTTILPALWSSTISNSPI 49
+ +K + + L+GTS+R + H + LP LW + + +
Sbjct: 671 IQAAKLIGMYTVLVGTSERIKGADHALESLHNMKEALPELWDEAVKDEDV 720
>12_02_0312 + 17395716-17398112
Length = 798
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 158 INDIERWTNLLPSRQFGYLVLTTS 229
IND E NLLPS + G ++L T+
Sbjct: 280 INDWEELMNLLPSGRSGSMILITT 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,689,506
Number of Sequences: 37544
Number of extensions: 237707
Number of successful extensions: 531
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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