Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F19
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   7e-07
SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             33   0.089
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         27   5.8  
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)                     27   5.8  
SB_54865| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 22/28 (78%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +2

Query: 125 CGVISPRFDVPINDIERW-TNLLPSRQF 205
           CGVISPRFDV + DIE+W +NLLPSRQF
Sbjct: 1   CGVISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 2   SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN-LTGRLNKCGVISPR 145
           SKVIVKFLTVMMKH        V   R G++V    +G L+  GV+  R
Sbjct: 31  SKVIVKFLTVMMKH--------VAQPRIGEMVTRPCSGALSAAGVVVTR 71


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 270 RCFLLASS*SMMPPLVVRTRYPNCL 196
           R  +  S  S++PPL VRT  PN L
Sbjct: 331 RSLIYISGTSLVPPLTVRTETPNTL 355


>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
          Length = 549

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 134 ISPRFDVPINDIERWTNLLPSRQFGYL 214
           ISP F VP  D ++ ++L+PS+Q  +L
Sbjct: 381 ISPIFTVPKKDGKKKSSLIPSQQITFL 407


>SB_54865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 217 SHNKWWHHGS*GSQKETSWRKN-SRLLFLSLFNTSENTF 330
           SHN+  HH     Q +  WR + SR L LS++     +F
Sbjct: 47  SHNESNHHAEHNLQSDAQWRHDTSRELTLSVYQELVRSF 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,818
Number of Sequences: 59808
Number of extensions: 267188
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)