Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F19
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   184   2e-47
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    28   2.9  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    27   3.9  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  184 bits (448), Expect = 2e-47
 Identities = 86/100 (86%), Positives = 94/100 (94%), Gaps = 1/100 (1%)
 Frame = +2

Query: 2   SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
           SKVIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNK  VISPR ++ +ND+E++T
Sbjct: 31  SKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPRLNIRLNDLEKYT 90

Query: 182 N-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
           N LLPSRQFGYL+LTTS GIMDHEEARRKHLGGKILGFFF
Sbjct: 91  NTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = -3

Query: 352 LIRVIKQKMYFHLY*INLEKEA*NFSSKMFPSGFLMIHDATTCCENKVPKLSGR*QVCPP 173
           L + +K ++Y H   +NL+KE     S +F S FLM+ +     E +V K+S   ++C P
Sbjct: 74  LSQKLKNELYLH---VNLKKEQQTSRSSIFESIFLMLEELGIIGE-RVTKIS---KLCVP 126


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 65  IVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWTN 184
           +VD     KI + +    NKCG I  +    +  +  WTN
Sbjct: 148 VVDQGDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,092,596
Number of Sequences: 27780
Number of extensions: 205948
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)