Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F19
(405 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 174 2e-44
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 174 2e-44
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 174 2e-44
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 173 5e-44
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 169 8e-43
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 109 9e-25
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 107 4e-24
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi... 29 1.6
At2g46225.1 68415.m05748 expressed protein 29 1.6
At3g62610.1 68416.m07033 myb family transcription factor similar... 27 3.6
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy... 27 4.8
At1g08810.1 68414.m00981 myb family transcription factor (MYB60) 27 6.3
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 174 bits (424), Expect = 2e-44
Identities = 80/100 (80%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 31 SKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWT 90
Query: 182 -NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 91 ARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 174 bits (424), Expect = 2e-44
Identities = 80/100 (80%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 31 SKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWT 90
Query: 182 -NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 91 ARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 174 bits (424), Expect = 2e-44
Identities = 80/100 (80%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 31 SKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWT 90
Query: 182 -NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 91 ARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 173 bits (420), Expect = 5e-44
Identities = 79/100 (79%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRFDV + +IE WT
Sbjct: 31 SKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWT 90
Query: 182 -NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
LLPSRQFG++VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 91 ARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 169 bits (410), Expect = 8e-43
Identities = 76/100 (76%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
SKVI+KFLTVM KHGYI EFE VDDHR+GKIVV L GRLN CGVISPR+D+ + +IE WT
Sbjct: 37 SKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWT 96
Query: 182 -NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK+LGFF+
Sbjct: 97 AKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 109 bits (261), Expect = 9e-25
Identities = 48/100 (48%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
S V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++ R DV +IE++T
Sbjct: 30 STVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYT 89
Query: 182 -NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 298
LP+RQ+GY+V+TT GI+DHEEA ++++GG++LGFF+
Sbjct: 90 ERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 107 bits (256), Expect = 4e-24
Identities = 48/99 (48%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIERWT 181
S V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++ R DV N+I ++T
Sbjct: 30 STVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYT 89
Query: 182 -NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 295
LP+RQ+GY+V+TT GI+DHEEA ++++GG++LGFF
Sbjct: 90 ERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
histidine--tRNA ligase, putative similar to SP|P12081
Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
PF00587: tRNA synthetase class II core domain (G, H, P,
S and T), PF03129: Anticodon binding domain
Length = 479
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 11 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIER 175
IVK LT ++ IG++E+ +HR K+ L G L CGV +F + I++
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRTICSSIDK 224
>At2g46225.1 68415.m05748 expressed protein
Length = 298
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 133 HFTPLRRSN**HREVDKLATVQTVWVPCSHNKWWHHGS 246
HF+PLRR++ ++ +Q P S + WH GS
Sbjct: 150 HFSPLRRTDTRQNHYQAISRLQPSDAPASKSLSWHLGS 187
>At3g62610.1 68416.m07033 myb family transcription factor similar to
myb-like transcription factor GI:168590 from [Zea mays]
Length = 343
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 147 KRGEMTPHLFSLPVRLTTILPALWSSTISNSP 52
KRG +TP + V+L + L WS+ SN P
Sbjct: 66 KRGNITPEEEDVIVKLHSTLGTRWSTIASNLP 97
>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
conatins Pfam profile: PF00067 cytochrome P450
Length = 407
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 2 SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN----LTGRLNKCGVISPRFDVPINDI 169
S +I L ++ K IG F+I DH G + V+ LTG L + + S + + D+
Sbjct: 195 SNLISAMLNMINKPTNIGSFKITSDHLKGVMSVSVYDFLTGTLIRATLGSNKERITEEDL 254
Query: 170 ER 175
E+
Sbjct: 255 EK 256
>At1g08810.1 68414.m00981 myb family transcription factor (MYB60)
Length = 280
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 147 KRGEMTPHLFSLPVRLTTILPALWSSTISNSP 52
KRG TPH + + L +L W+S S P
Sbjct: 66 KRGNFTPHEEGMIIHLQALLGNKWASIASYLP 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,534,279
Number of Sequences: 28952
Number of extensions: 194177
Number of successful extensions: 401
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -