Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F18
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    29   0.32 
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    28   0.55 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   3.9  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   5.2  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   5.2  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   6.8  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   6.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   9.0  

>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 102 TYLSFSHVKLFTINSLHFLQVFHFCNFKLFFHSQ 1
           +YL F H KLF   S     VF  C  + F +SQ
Sbjct: 3   SYLQFPHRKLFIQFSYSLTSVFRKCQSRTFMNSQ 36


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = -3

Query: 254 YFTFQQCSS**LLTHDSNMDKVRNISSK----VLMVFILYIHFKKLTHISGYSKSHIYLF 87
           +F+F       L++H      +  + SK    ++ V +L  HF  + H    + +  YLF
Sbjct: 268 FFSFPSYIIKYLMSHSRRSKLLSAVFSKKSFLIVSVLLLIAHFNTIFHPFILADNRHYLF 327

Query: 86  HMLNYLQ*IHYTFYKF-FIFVILNCFFI 6
           ++ N L  I +  Y   F ++IL  FF+
Sbjct: 328 YVFNRLFRIWWLKYLGPFSYLILYYFFL 355


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +3

Query: 318  GRLYTGNEYMFLPI--CLKF*TSTSLISLQK 404
            G L + NEY+FLPI  C+   T   L SL+K
Sbjct: 1659 GMLSSYNEYLFLPIRRCISSITKMLLSSLKK 1689


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 133 FLKCIYKMKTIRTLEEILRTLSIL 204
           FL+C +K + I TL+ I R + ++
Sbjct: 897 FLRCFFKTEFITTLKRINRNIQVI 920


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 360 IWVGTCIRCLCKVYHNLYK 304
           IW G C + +   Y NLYK
Sbjct: 271 IWAGKCPKTIRMFYSNLYK 289


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 366 LNIWVGTCIRCLCKVYHNL 310
           L IW  T + CLCK Y  L
Sbjct: 125 LQIWDITSLSCLCKFYTKL 143


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 182 ISSKVLMVFILYIHFKKLTHISGYSKSHIYLF 87
           +S  +L+    Y+ +K + H+S   KS  Y+F
Sbjct: 9   LSYDILLEISTYLDYKDIVHLSETCKSLSYVF 40


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 91  R*ICDFEYPEIWVNFLKCIYKMKTIRTLEEILRT 192
           R I   + P + + FLK     + IR LEE+++T
Sbjct: 415 RSIKSIDIPSVCLEFLKAQEIKQLIRLLEELIKT 448


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/42 (19%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 206  SNMDKVRNISSKVLMVFILYIHFKKLTHISGYSK-SHIYLFH 84
            S++D  + ++ ++++VF+ ++H  + +  +  +K + +Y  H
Sbjct: 1575 SDLDNKQQLNDQIIIVFVSWVHLLRNSATNDETKAAFVYQLH 1616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,693
Number of Sequences: 5004
Number of extensions: 35604
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)