Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F18
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0105 - 5345149-5347833                                           30   0.95 
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    27   5.1  
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297...    27   8.8  

>10_02_0105 - 5345149-5347833
          Length = 894

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 78  KLFTINSLHFLQVFHFCN 25
           +LF+ N LH L+V HFC+
Sbjct: 563 RLFSFNGLHLLRVLHFCS 580


>07_03_1783 + 29480987-29481165,29481526-29481685,29481767-29481862,
            29481948-29482062,29482175-29482337,29482536-29482707,
            29483924-29484013,29484137-29484598,29484675-29485268,
            29485486-29485554,29485810-29485902,29486432-29486677,
            29487277-29487417,29487748-29487828,29487911-29487973,
            29488059-29488166,29488303-29488383,29488474-29488521,
            29488979-29489053,29489973-29490068,29490156-29490236,
            29490295-29490402,29490989-29491033,29491119-29491202,
            29491379-29491482,29491581-29491728
          Length = 1233

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 106  FEYPEIWVNFLKC 144
            ++YP++WV FLKC
Sbjct: 1124 WKYPKLWVGFLKC 1136


>01_01_0384 -
           2970369-2970726,2970812-2970882,2971428-2971509,
           2971757-2971818,2972308-2972401,2972502-2972569,
           2972681-2972747,2972830-2972960,2973093-2973200,
           2973577-2973642,2973706-2973774,2973990-2974115,
           2974167-2974284,2974741-2974847,2975889-2976009,
           2976162-2976235,2976955-2977051,2977564-2977679,
           2978218-2978313,2978426-2978635,2979101-2979253
          Length = 797

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 124 WVNFLKCIYKMKTIRTLEEILRTLSILESCVNNY 225
           W+NFL+  +++++    ++  RT   LE C +N+
Sbjct: 508 WINFLEDTWQLQSSYNEQKEKRTNDELERCTDNF 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,683,324
Number of Sequences: 37544
Number of extensions: 171129
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)