Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F18
         (442 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01400.1 68418.m00053 expressed protein contains low similari...    27   4.2  
At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof...    27   7.4  
At3g19990.1 68416.m02529 expressed protein                             27   7.4  

>At5g01400.1 68418.m00053 expressed protein contains low similarity to
            symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 106  FEYPEIWVNFLKC 144
            ++YP++WV FLKC
Sbjct: 1173 WKYPKLWVGFLKC 1185


>At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 520

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 241 NNVVVSNY*HTIPIWTRCAI 182
           N V +S Y  T  +WTRC +
Sbjct: 142 NGVPISEYQKTCKVWTRCTV 161


>At3g19990.1 68416.m02529 expressed protein
          Length = 425

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 375 FKILNIWVGTCIRCLCKVYHNLY 307
           +KIL +W      CLC ++H+ Y
Sbjct: 62  YKILKLWKAPESVCLCGLFHSAY 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,569,911
Number of Sequences: 28952
Number of extensions: 161723
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)