Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F16
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    26   3.0  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    26   3.0  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   5.3  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   7.0  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    25   7.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   9.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 416 ASATAASHPACP*PALRGDSCQYLVGFPNAMRSS 315
           +S+ A S+P  P PA+ G S   L    NA R+S
Sbjct: 380 SSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTS 413


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 207 NDAVRVTTSHVVDEIH*NGFF 145
           NDA+ VT+   +D I+ NGF+
Sbjct: 319 NDAILVTSMSQIDNIYDNGFY 339


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = -3

Query: 119 PGL*SPVILSTINIFF 72
           PGL SP+++ST++I+F
Sbjct: 108 PGLLSPIVVSTVSIWF 123


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 106 DQSPGTPLDVNSPEEA 153
           DQ+P TP DV SP  A
Sbjct: 364 DQTPSTPKDVGSPSTA 379


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 196 YCIVWTPIPVLTWIFPFLG 252
           +   WT  P + WI PF+G
Sbjct: 383 FVFAWTNSPNIHWIAPFIG 401


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 283 IRDFAGPYFVSEDLMAFGNPTKYWQLSP 366
           I++F  PY   +D+   G  + +W+L+P
Sbjct: 164 IQEFIRPY-AQKDIFCVGGTSLFWKLTP 190


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 311 TKYGPAKSLIIPDDVQMPI*PKNGKIHVKTGIGVQ 207
           TKYG + S I+P   ++ + P     HV T  GV+
Sbjct: 726 TKYGLSMSYILPVLERLKLPPSARAQHVPTTAGVE 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,725
Number of Sequences: 5004
Number of extensions: 53826
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)