Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F16
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.59 
SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)             31   0.78 
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)               29   3.1  
SB_36067| Best HMM Match : Pkinase (HMM E-Value=0.073)                 27   7.2  
SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +1

Query: 127 LDVNSPEEAVLMDLIDHVRCRYPYCIV-WTPIPVLTWIFPFLG--HMGICTSSG 279
           + +   ++ ++MD+  ++    PY +  WTP+P++  +F  +G  H+G+  S G
Sbjct: 313 IHIEEDQQEMIMDVTPYMN-PCPYVVFPWTPVPLVFNLFRTMGLRHLGVTNSKG 365


>SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)
          Length = 1137

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -3

Query: 425  ISEASATAASHPACP*PALRG-DSCQYLV-GFPNAMRSSETKYGPAKSLIIPDD 270
            IS  +  A+S+ A   P++RG +S +  + GFP+  R  E+  G   SL+ PDD
Sbjct: 909  ISMMADDASSYLASEPPSVRGPESAENSMDGFPDTSREDESLMGMDSSLLGPDD 962


>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
          Length = 553

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
 Frame = +1

Query: 199 CIVWTPIPVLTWI-------FPFLGH-MGICTSSGIIRDFAG 300
           C+ W P PV  WI        PF G  + +CT+S   RD  G
Sbjct: 435 CVEWNPFPVDFWISPHSVVGSPFCGQSLTLCTNSNRARDSLG 476


>SB_36067| Best HMM Match : Pkinase (HMM E-Value=0.073)
          Length = 102

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 439 FSSYISLKLLPLQHPIQLVLDQH*EVTAANI*LDFQMP*GPPKQSMG 299
           + ++I  +LL   HP  ++LD+H  V  +++ L        P  S+G
Sbjct: 21  YDNFIMRELLACSHPANILLDEHGHVRISDLGLACDFSKKKPHASVG 67


>SB_21037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 148 EAVLMDLIDHVRCRYPYCIVWTPI---PVLTWIFPFLGHMGICTSSGII 285
           E V    I+ +RC     IVW  I     + W+  F+G  GI TSS I+
Sbjct: 131 EIVTNSAIEWLRC----FIVWRGIVSSSAIEWLRRFIGWRGIVTSSAIV 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,873,530
Number of Sequences: 59808
Number of extensions: 385728
Number of successful extensions: 834
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)