Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F16
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   5.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   5.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   5.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   5.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 265 CTSSGIIRDFAGPYFVSEDLMAFGNPTKYWQLSPLNAGQGQ 387
           C+S  ++   A  Y V  D + F N   Y + S   AG G+
Sbjct: 414 CSSEVMMLRMARKYDVQTDSIIFANNQPYTKDSYTVAGMGE 454


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 475 HGNDNCHKILYAFSSYISLKLLPLQHPI 392
           H N+N  K+ Y   +YI    +P+  PI
Sbjct: 313 HNNNNYKKLQYYNINYIEQIPVPVPIPI 340


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 475 HGNDNCHKILYAFSSYISLKLLPLQHPI 392
           H N+N  K+ Y   +YI    +P+  PI
Sbjct: 324 HNNNNYKKLQYYNINYIEQIPVPVPIPI 351


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 475 HGNDNCHKILYAFSSYISLKLLPLQHPI 392
           H N+N  K+ Y   +YI    +P+  PI
Sbjct: 324 HNNNNYKKLQYYNINYIEQIPVPVPIPI 351


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 475 HGNDNCHKILYAFSSYISLKLLPLQHPI 392
           H N+N  K+ Y   +YI    +P+  PI
Sbjct: 313 HNNNNYKKLQYYNINYIEQIPVPVPIPI 340


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 4/18 (22%)
 Frame = +1

Query: 208 WTP----IPVLTWIFPFL 249
           W P    +P+ TWI P+L
Sbjct: 530 WNPLTDTVPIHTWIHPWL 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,492
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)