Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F16
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26070.1 68415.m03130 expressed protein                            109   9e-25
At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608...    93   8e-20
At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608...    93   8e-20
At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS cla...    28   4.5  
At4g19120.2 68417.m02822 early-responsive to dehydration stress ...    27   5.9  
At4g19120.1 68417.m02821 early-responsive to dehydration stress ...    27   5.9  
At4g18870.1 68417.m02783 heat shock transcription factor family ...    27   5.9  
At3g29330.1 68416.m03683 expressed protein                             27   5.9  
At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containi...    27   7.8  

>At2g26070.1 68415.m03130 expressed protein
          Length = 250

 Score =  109 bits (263), Expect = 9e-25
 Identities = 60/149 (40%), Positives = 84/149 (56%), Gaps = 21/149 (14%)
 Frame = +1

Query: 145 EEAVLMDL--IDHVRCRYPYCIVWTPIPVLTWIFPFLGHMGICTSSGIIRDFAGPYFVSE 318
           +EA L  L  ID  + ++P CIVWTP+PV++W+ PF+GH+G+C   G+I DFAG  F++ 
Sbjct: 34  DEADLWPLPEIDTKKSKFPCCIVWTPLPVVSWLAPFIGHIGLCREDGVILDFAGSNFINV 93

Query: 319 DLMAFGNPTKYWQLS------PLNAGQ------------GQA-GWDAAVAEASEIYKKRM 441
           D  AFG P +Y QL       P N G             G A  WD A++ ++  ++ + 
Sbjct: 94  DDFAFGPPARYLQLDRTKCCLPPNMGGHTCKYGFKHTDFGTARTWDNALSSSTRSFEHKT 153

Query: 442 HIIFYDNCHSHVATALNIMNYDGCKNWNM 528
           + IF  NCHS VA  LN + Y G   WNM
Sbjct: 154 YNIFTCNCHSFVANCLNRLCYGGSMEWNM 182


>At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 93.5 bits (222), Expect = 8e-20
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 22/142 (15%)
 Frame = +1

Query: 169 IDHVRCRYPYCIVWTPIPVLTWIFPFLGHMGICTSSGIIRDFAGPYFVSEDLMAFGNPTK 348
           ID  R R+P CIVWTP+P ++W+ PF+GH+GIC   G+I DFAGP FV  D  AFG  ++
Sbjct: 22  IDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVILDFAGPNFVCVDNFAFGAVSR 81

Query: 349 YWQL-----SPLNAGQG-----------------QAGWDAAVAEASEIYKKRMHIIFYDN 462
           Y Q+     S  ++  G                 +  WD A+ ++++ Y+   + I   N
Sbjct: 82  YIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTCN 141

Query: 463 CHSHVATALNIMNYDGCKNWNM 528
           CHS VA  LN ++      WN+
Sbjct: 142 CHSFVANNLNRLSIKS-GGWNV 162


>At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608:
           Protein of unknown function (DUF778)
          Length = 231

 Score = 93.5 bits (222), Expect = 8e-20
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 22/142 (15%)
 Frame = +1

Query: 169 IDHVRCRYPYCIVWTPIPVLTWIFPFLGHMGICTSSGIIRDFAGPYFVSEDLMAFGNPTK 348
           ID  R R+P CIVWTP+P ++W+ PF+GH+GIC   G+I DFAGP FV  D  AFG  ++
Sbjct: 22  IDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVILDFAGPNFVCVDNFAFGAVSR 81

Query: 349 YWQL-----SPLNAGQG-----------------QAGWDAAVAEASEIYKKRMHIIFYDN 462
           Y Q+     S  ++  G                 +  WD A+ ++++ Y+   + I   N
Sbjct: 82  YIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTCN 141

Query: 463 CHSHVATALNIMNYDGCKNWNM 528
           CHS VA  LN ++      WN+
Sbjct: 142 CHSFVANNLNRLSIKS-GGWNV 162


>At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 333 WKSN*ILAAVTS*CWSRTSWMGCCSGRS 416
           +K   I AAV    +  T+W+GC SGRS
Sbjct: 343 FKKRDISAAVKLVYYRATNWLGCLSGRS 370


>At4g19120.2 68417.m02822 early-responsive to dehydration stress
           protein (ERD3) identical to ERD3 protein [Arabidopsis
           thaliana] GI:15320410; contains Pfam profile PF03141:
           Putative methyltransferase; identical to cDNA  ERD3
           GI:15320409
          Length = 600

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 289 DFAGPYFVSEDLMAFGNPTKYWQLS--PLNAGQGQAGWDAAVAEASEIYKKRMHII 450
           +F G Y +  ++     P  +W LS  P+N      GWD  + E    Y+K   ++
Sbjct: 271 EFGGVYLL--EVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELL 324


>At4g19120.1 68417.m02821 early-responsive to dehydration stress
           protein (ERD3) identical to ERD3 protein [Arabidopsis
           thaliana] GI:15320410; contains Pfam profile PF03141:
           Putative methyltransferase; identical to cDNA  ERD3
           GI:15320409
          Length = 600

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 289 DFAGPYFVSEDLMAFGNPTKYWQLS--PLNAGQGQAGWDAAVAEASEIYKKRMHII 450
           +F G Y +  ++     P  +W LS  P+N      GWD  + E    Y+K   ++
Sbjct: 271 EFGGVYLL--EVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELL 324


>At4g18870.1 68417.m02783 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 291

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 198 LHRLDTDPGFDMDLSIFGSYGHLYIIWNNQRFC 296
           ++ +  DP  D  +S +   G  +IIWN Q FC
Sbjct: 151 IYEMVDDPSSDAIIS-WSQSGKSFIIWNPQEFC 182


>At3g29330.1 68416.m03683 expressed protein
          Length = 232

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 97  MTGDQSPGTPLDVNSPEEAVLMDLIDHVRCRYPYCIVWT 213
           +T D +P   LD+N+ + +   DLI+     YP    WT
Sbjct: 78  VTVDTTPYYTLDMNAQQNSAWPDLIEQSHSIYPPDFSWT 116


>At2g01390.1 68415.m00056 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 577

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 397 DAAVAEASEIYKKRMHIIFYDNCHSH 474
           D  V EA+E+YK+ +      NCH++
Sbjct: 205 DGRVEEATEVYKEMLRSRVSPNCHTY 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,846
Number of Sequences: 28952
Number of extensions: 282727
Number of successful extensions: 558
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)