Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F14
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09430.1 68416.m01120 hypothetical protein                          30   0.84 
At1g52310.1 68414.m05902 protein kinase family protein / C-type ...    29   1.5  
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot...    28   3.4  
At2g48020.2 68415.m06011 sugar transporter, putative similar to ...    28   3.4  
At2g48020.1 68415.m06010 sugar transporter, putative similar to ...    28   3.4  

>At3g09430.1 68416.m01120 hypothetical protein
          Length = 247

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 282 PQSLDYPSRSDSPPRTASMPSRESHVLQVP 193
           P ++ YP+ + SPP   S PS +S +LQ+P
Sbjct: 45  PLAIRYPNYN-SPPTPVSYPSPQSKILQIP 73


>At1g52310.1 68414.m05902 protein kinase family protein / C-type
           lectin domain-containing protein contains protein kinase
           domain, Pfam:PF00069, PF00059 Lectin C-type domain
          Length = 552

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
 Frame = -1

Query: 227 CRRVSLTFCKCLAEICLIGVD-*KCAMVITC----QMAQLCSCPRDFIFISDNDILTFID 63
           CR+ SL    CLA +CL  +D   C          + +Q  SCP D+I I  N    +  
Sbjct: 8   CRKQSLFLISCLALLCLASLDTISCESTQNATDFKKRSQTVSCPPDWI-IGPNQTKCYAY 66

Query: 62  YGFDTKFSEERSF 24
           +   T + +   F
Sbjct: 67  FKNSTSWEKSEMF 79


>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 438

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 168 NANKADLSKALAKRETHATASTRSEVANLTDLDNRVTVESLQTALGYEY 314
           N +   ++KA    E   T S RSE++N  +LD   T   L    G +Y
Sbjct: 33  NPDPDPVNKAETPEEEERTVSKRSEMSNSGELDESGTSNCLGKRKGQKY 81


>At2g48020.2 68415.m06011 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 120 AKLGHLTGYHHCTLLVNANKADLSKALAKRETHATASTRSEVANLTDLDNRVTVESLQTA 299
           AK+G  T +      +   KAD+S+  A+ + +     R   A + DL  R  + S+  A
Sbjct: 208 AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIA 267

Query: 300 LG 305
            G
Sbjct: 268 FG 269


>At2g48020.1 68415.m06010 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 120 AKLGHLTGYHHCTLLVNANKADLSKALAKRETHATASTRSEVANLTDLDNRVTVESLQTA 299
           AK+G  T +      +   KAD+S+  A+ + +     R   A + DL  R  + S+  A
Sbjct: 208 AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIA 267

Query: 300 LG 305
            G
Sbjct: 268 FG 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,297,633
Number of Sequences: 28952
Number of extensions: 177040
Number of successful extensions: 447
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)