Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F13
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    28   1.1  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    28   1.4  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   1.9  
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.8  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.6  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +2

Query: 143  SRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD-- 316
            S + +++G++ +  +GT G    +   G    K S    +++ + + + AA   ++ +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 317  -NVNRHGATLTNTHIPGIGDKLSVAGKV 397
              + +HG T+   HI  +GD ++  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 323 NRHGATLTNTHIP-GIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 493
           N+   T T+T    G GDK S AGK N+   +    S  +    +    S+ PS N+V
Sbjct: 252 NKESTTATSTLTDAGFGDKSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSV 309


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 185 DGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPG 364
           D +SGA++ V  T     +    GS+  T+ I     T+G V + V     T+T T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTV-EVVEPTAGTVTETIISG 850


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 424 IMVVVMKQVHFTSNRQFISNSRNMSVCEGSSVAV 323
           I  V +  + F ++      S N+SV EGSS+ +
Sbjct: 73  IYAVCLMNIFFRNSENCFKYSMNLSVAEGSSILI 106


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +2

Query: 365 IGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASAS 544
           I    ++ G   L  NN       AF + +  T +   S++++  GL+ + K        
Sbjct: 197 ISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLL 256

Query: 545 AAHTDFFNKN 574
           +  T FF +N
Sbjct: 257 SNATSFFGEN 266


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 506 EYMFKDKIGASASAAHTDFFNKNDYXLGGKLNLFKTPSTSLDFTAG 643
           E++  +  G S+++   +F   N   L   L+LF +PS+    TAG
Sbjct: 223 EFLLPNLFGNSSTSPQDNFGTSNS-ALSRNLDLFGSPSSENKSTAG 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,781
Number of Sequences: 5004
Number of extensions: 55627
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)