Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F13
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32)                   30   1.5  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   28   6.0  
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  28   6.0  
SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)                       28   8.0  
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)                 28   8.0  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   8.0  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
 Frame = +2

Query: 137  TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVY- 313
            T   V+ +  + TIN    +   +K  + GN +  L A  S    N  K G     + Y 
Sbjct: 658  TIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDKDVVISYS 714

Query: 314  DNVNRHGATLTNTH-IPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNT 490
            DN+N   A  T+   IPG   K     KVN   +     +  A  +    T SH   ++ 
Sbjct: 715  DNMNNSKAANTDQFGIPGSDSKTGSDSKVNAKASGQTSNAMDASNSDTRETSSHAIGSDQ 774

Query: 491  VG 496
            +G
Sbjct: 775  IG 776


>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 285  NLIWLVRSTEPRALSL*FSFPVIGTLTIAPEVPSELIVS 169
            NL  +  S  PR LS    FP +G+ TI P   S +IVS
Sbjct: 1187 NLDGVDSSVMPRELSQVLRFPFLGSFTIRPLAQSSVIVS 1225


>SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32)
          Length = 1556

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 398 NLFHNNDHDLSAKAFAT-RNMPTISHLPST-NTVGGGLEYMFKDKIGASASAAHTDFFNK 571
           NL     +D+++    T ++M  +   PST N    GL+   +   GAS S    D F++
Sbjct: 513 NLTFKKAYDIASSMETTAQHMADLQSAPSTLNVELNGLKVQMELDTGASLSVIGEDIFDQ 572

Query: 572 NDYXLGGKLNLFKTPSTSLDFT 637
                G  LNL  T  T   +T
Sbjct: 573 LKNIEGSSLNLQDTKLTLKTYT 594


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 362 GIGDKLSVAGKVNLFHNNDHDLSAKAFAT 448
           G+ D L++ G VN+FHN   DL++++ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +2

Query: 176 INSDGTSGAMVKVPITGN-ENHKLSALGSVD----LTNQIKLGAATAGLVYDNVNRHGAT 340
           I+SD    + ++V  +GN +N  LS + S        N I    +T+ L + N   HG+T
Sbjct: 632 ISSDYHGDSSLRVHSSGNHDNTSLSGVSSGSHGNFSGNGIYRSRSTSNLSHGN---HGST 688

Query: 341 LTNTHIPGIGDKLSVAGKVNLFHNN 415
            T     GI   L+     N FH N
Sbjct: 689 TTRNMSSGIQSNLAFGRLSNGFHEN 713


>SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)
          Length = 321

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +2

Query: 404 FHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDFFNKNDY 580
           F N D++ +             H P  N  GGG+  +FKD +    ++   + FN  ++
Sbjct: 224 FKNGDYNSAEMGTLCPTGYRFLHSPRLNARGGGVALLFKDLLRLEINSRICEHFNTFEF 282


>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
          Length = 2658

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +2

Query: 470 HLPSTNTVGGGLEYMFKDKIGASASAAHTDFFNKNDYXLGGKLNLFKTPST-----SLDF 634
           HLP+       ++ +F D +     A  +  FNK D  +   L L  + +      SL F
Sbjct: 107 HLPTAGDKEAAIDAIFYDDLMLGLCAMVSWVFNKEDTLIITTLRLSWSNNASGTGQSLPF 166

Query: 635 TAGWHKFDTP 664
           TA W+ F  P
Sbjct: 167 TAKWYMFRHP 176


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +3

Query: 399 TCFITTTMIYPRRRSRPEICPPFPIYHQPTLLVVVSNICSRTRSVHQRAP 548
           TC   T   Y R   R   C PF  +   T  V  SN C  TR+ +   P
Sbjct: 26  TCRFETC--YERDTGRATPCMPFTSFMSLTRNVTTSNTCGTTRAKYCELP 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,053,898
Number of Sequences: 59808
Number of extensions: 436711
Number of successful extensions: 1014
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)