Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F12
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 161 4e-40
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 142 1e-34
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 47 8e-06
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 38 0.004
03_06_0625 - 35166736-35168166 28 3.7
11_06_0284 + 21909758-21913645 28 5.0
02_04_0404 + 22626709-22628601 28 5.0
04_03_0016 - 9420135-9420445,9420567-9420642,9420799-9420879 27 6.5
07_03_1047 + 23535329-23535465,23535561-23535642,23535814-23536302 27 8.7
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 27 8.7
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 161 bits (390), Expect = 4e-40
Identities = 75/161 (46%), Positives = 104/161 (64%)
Frame = +1
Query: 22 DFTKRNTKVIGLSCDSIESHIEWCNDIKSYAGCSNEDETFPYPIIEDKNRELALKLDMID 201
+F KR K++G+SCD ++SH +W DI++Y YPI+ D +RE +L+M+D
Sbjct: 94 EFDKRGVKLLGISCDDVQSHKDWIKDIEAY----KPGNRVTYPIMADPSREAIKQLNMVD 149
Query: 202 KDELDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQLTDKGKVATP 381
DE D+ G L +RA+ IV P+KK +LS LYPA GRN DE+VR +D+LQ K VATP
Sbjct: 150 PDEKDSNGGHLPSRALHIVGPDKKVKLSFLYPACVGRNMDEVVRAVDALQTAAKHAVATP 209
Query: 382 VDWKMGDECMVLPTVPEDQVAEIFPEGVTVVPLPSGKNYLR 504
V+WK G+ ++ P V +D+ E FP+G LPSGK YLR
Sbjct: 210 VNWKPGERVVIPPGVSDDEAKEKFPQGFDTADLPSGKGYLR 250
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 142 bits (345), Expect = 1e-34
Identities = 69/161 (42%), Positives = 97/161 (60%)
Frame = +1
Query: 22 DFTKRNTKVIGLSCDSIESHIEWCNDIKSYAGCSNEDETFPYPIIEDKNRELALKLDMID 201
+F KR K++G SCD +ESH +W DI++Y +PI+ D +RE +L+MID
Sbjct: 59 EFDKRGVKLLGFSCDDVESHKDWIKDIEAY----KPGRRVGFPIVADPDREAIRQLNMID 114
Query: 202 KDELDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQLTDKGKVATP 381
DE D G L RA+ IV P+KK +LS L+PA TGRN E++R D+L + +VATP
Sbjct: 115 ADEKDTAGGELPNRALHIVGPDKKVKLSFLFPACTGRNMAEVLRATDALLTAARHRVATP 174
Query: 382 VDWKMGDECMVLPTVPEDQVAEIFPEGVTVVPLPSGKNYLR 504
V+WK G+ ++ P V +++ FP G LPS K YLR
Sbjct: 175 VNWKPGERVVIPPGVSDEEAKARFPAGFETAQLPSNKCYLR 215
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 47.2 bits (107), Expect = 8e-06
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = +1
Query: 76 SHIEWCNDIKSYAGCSNEDETFPYPIIEDKNRELALKLDMIDKDELDATGIPLTARAVFI 255
SH+ W + G + YP+I D + ++ ++ D+ GI L R +FI
Sbjct: 213 SHLAWVQTDRKSGGLGD----LKYPLISDVTKSISKSFGVLIPDQ----GIAL--RGLFI 262
Query: 256 VDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQ-LTDKGKVATPVDWKMGDECM 411
+D + S + GR+ DE +R L +LQ + D P WK GD+ M
Sbjct: 263 IDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKSM 315
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 211 LDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQ-LTDKGKVATPVD 387
+D+ GI L R +FI+D + S + GR+ DE +R L +LQ + + P
Sbjct: 76 IDSVGIAL--RGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAG 133
Query: 388 WKMGDECM 411
WK G++ M
Sbjct: 134 WKPGEKSM 141
>03_06_0625 - 35166736-35168166
Length = 476
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +1
Query: 163 KNRELALKLDMIDKDELDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLD 342
+ R LA+ + +ID + DAT TAR + +P+ FRL L P + R LD
Sbjct: 28 RRRGLAVVVAVIDPPDNDATSADATAR-LAAANPSITFRL-LPAPPSPDAAAHPARRALD 85
Query: 343 SLQLTD 360
+L+L +
Sbjct: 86 ALRLAN 91
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = -1
Query: 330 NYLIEISSCSSRIQE*QSKLLVRVHNENCTGCERYSCCIQFILINHIQFQCQLSILI 160
N L +++ CS+ + + ++L ++ C + SC ++ F+C +LI
Sbjct: 1168 NKLAKVTLCSTPLNQDDLEVLAKLPKLQCVRLQHISCTGSVLIFKEDDFKCLKYLLI 1224
>02_04_0404 + 22626709-22628601
Length = 630
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 502 LGNSCRRAAGPQLRPQ--GISLLLDPPVQSVAPYTRHPSSNPPAS 374
+ +S RR +LR + G+ LL +AP PSS+PPA+
Sbjct: 53 MSSSARRRLAARLRSELAGVRALLAKAAGFLAPEGAAPSSSPPAA 97
>04_03_0016 - 9420135-9420445,9420567-9420642,9420799-9420879
Length = 155
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 358 DKGKVATPVDWKMGDECMVLPTVPEDQVAEIFPEGVTVVPLPSG 489
D GKV V +K G P VP D VA + G P+G
Sbjct: 73 DAGKVMRRVAYKTGKRVEPWPYVPYDTVAHPYAPGAYDKKAPAG 116
>07_03_1047 + 23535329-23535465,23535561-23535642,23535814-23536302
Length = 235
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -3
Query: 484 RAAGPQLRPQGISLLLDPP---VQSVAPYTRHPSSNPPASRLSLYQSTVESPTHELSH 320
R GP +G+ +LLD V+ + P TR + PPA+ + S + SP H L H
Sbjct: 83 RVFGPTA--EGLLVLLDEATFAVRLLNPLTRQLTDLPPATTVLDPTSLMISPVHYLLH 138
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 27.1 bits (57), Expect = 8.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 258 HNENCTGCERYSCC 217
H ENC C +SCC
Sbjct: 286 HKENCCSCGLFSCC 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,213
Number of Sequences: 37544
Number of extensions: 313597
Number of successful extensions: 963
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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