Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F12
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)               198   3e-51
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                    57   1e-08
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)              42   4e-04
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.10 
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          28   3.8  
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_6486| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_41590| Best HMM Match : WD40 (HMM E-Value=6.5e-13)                  28   5.1  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               28   5.1  
SB_24100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_33100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_30266| Best HMM Match : Fzo_mitofusin (HMM E-Value=1.2)             27   6.7  
SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_34131| Best HMM Match : DUF1289 (HMM E-Value=3.7)                   27   8.9  
SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)                  27   8.9  

>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score =  198 bits (482), Expect = 3e-51
 Identities = 92/152 (60%), Positives = 113/152 (74%), Gaps = 1/152 (0%)
 Frame = +1

Query: 52  GLSCDSIESHIEWCNDIKSYAGCSNEDET-FPYPIIEDKNRELALKLDMIDKDELDATGI 228
           GLSCD  ESH  W  DI  Y    N+    F YPII D+ RELA+KL M+D DE D+ G+
Sbjct: 3   GLSCDDAESHRGWVKDITKYNLEQNKSSAKFNYPIIADERRELAVKLGMVDPDEKDSKGL 62

Query: 229 PLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQLTDKGKVATPVDWKMGDEC 408
           PLT RAVFI+ P+KK +LS+LYPATTGRNFDEI+RV+DSLQLT   KVATPVDWK+G +C
Sbjct: 63  PLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGGDC 122

Query: 409 MVLPTVPEDQVAEIFPEGVTVVPLPSGKNYLR 504
           MV+P++  ++   IFP+GV  + LPSGK YLR
Sbjct: 123 MVIPSIKPEEEGTIFPKGVRALDLPSGKRYLR 154


>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 36/126 (28%), Positives = 60/126 (47%)
 Frame = +1

Query: 22  DFTKRNTKVIGLSCDSIESHIEWCNDIKSYAGCSNEDETFPYPIIEDKNRELALKLDMID 201
           +F   N +VI  S DS  SH+ W N  +   G  N +     PI+ D  ++++    ++ 
Sbjct: 110 EFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNIN----IPILSDLTKQISKDYGVLL 165

Query: 202 KDELDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQLTDKGKVATP 381
           +D+    G+ L  R +FI+D     R   +     GR+ DE +R++ + Q TDK     P
Sbjct: 166 EDQ----GVAL--RGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCP 219

Query: 382 VDWKMG 399
             W+ G
Sbjct: 220 AGWRPG 225


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 23/84 (27%), Positives = 42/84 (50%)
 Frame = +1

Query: 148 PIIEDKNRELALKLDMIDKDELDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEI 327
           PI+ D  ++++    ++ +D+    G+ L  R +FI+D     R   +     GR+ DE 
Sbjct: 17  PILSDLTKQISKDYGVLLEDQ----GVAL--RGLFIIDDKGILRQITINDLPVGRSVDET 70

Query: 328 VRVLDSLQLTDKGKVATPVDWKMG 399
           +R++ + Q TDK     P  W+ G
Sbjct: 71  LRLIQAFQFTDKHGEVCPAGWRPG 94


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 307 GRNFDEIVRVLDSLQLTDKGKVATPVDWKMGDECMV 414
           GR+ DE +R++ + Q TDK     P  WK G + ++
Sbjct: 2   GRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTII 37


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +1

Query: 16  LPDFTKRNTKVIGLSCDSIESHIEWCNDIKSYAGCSNEDETFPYPI--IEDKNRELALKL 189
           + +F   NT+V+G S DS+ +H+ W   I    G   +      P+    D+   L    
Sbjct: 110 IEEFRAINTEVVGCSVDSVFTHLAWGLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAF 169

Query: 190 DMIDKDELDATGIPLTARAVFIV 258
              DK  L    I L+ +A F++
Sbjct: 170 QYTDKHALYTNSI-LSLKAFFVM 191



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 238 ARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQLTDKGKVAT 378
           A  +FI+D     R   +     GR+ DE +R++ + Q TDK  + T
Sbjct: 133 AWGLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHALYT 179


>SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 220 LHPIHPYQSYPVSMPALYSYPQ--LLGTEMFHPHYYNLHN 107
           L P  P   YP +MP  Y YP   ++   M+ P  Y  H+
Sbjct: 862 LPPQFPQYPYPAAMPVPYGYPMIPMIPPAMYPPMAYPAHH 901


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 265 NKKFRLSLL-YPATTGRNFDEIVRV--LDSLQLTDKGKVATPVDWKMGDECMVLPTVPED 435
           +KK RL +L +P  T +  D  V V  L  L     G     + W+MGD     P   E 
Sbjct: 391 SKKARLEVLEFPVLTRKPHDVSVHVGGLIKLPCAATGYPVPVISWRMGDGKSKFPAAEEK 450

Query: 436 QVAEIFPEGVTVV 474
           ++  +  E + ++
Sbjct: 451 RIEHLPSEHLFII 463


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 382  VDWKMGDECMVLPTVPEDQVAEIF 453
            VDW +GDE +V  T  E +  E+F
Sbjct: 2704 VDWAVGDEIVVASTTVETRQTEVF 2727


>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +1

Query: 178 ALKLDMIDKDELDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQLT 357
           A++    DK++L    +PL   + F+  P     +S   PA   R   ++     S    
Sbjct: 386 AIQTPTSDKNQLQGKPLPLRPLSEFVTTPISATAISAEAPALPSRGQGQLTPQTSSASTD 445

Query: 358 DKGKVATP 381
           D+  VA P
Sbjct: 446 DEHVVAMP 453


>SB_6486| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -1

Query: 276 KLLVRVHNENCTGCER--YSCCI 214
           K LV+VH+++CTG  R   SCC+
Sbjct: 129 KSLVKVHDQSCTGKARDVTSCCV 151


>SB_41590| Best HMM Match : WD40 (HMM E-Value=6.5e-13)
          Length = 242

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 1   RILKLLPDFTKRNTKVIGLSCDSIE-SHIEWCNDIKSYAGCSNEDETFP 144
           R+L L+    K NTK+ G+ C       + W  ++  +  C +++E  P
Sbjct: 120 RVLDLVALNEKSNTKITGILCHKQHIITVGWSKNVIFHRNCRDDEEDVP 168


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 406  TRHPSSNPPASRLSLYQSTVESPTHELSHRN 314
            +RHP+S+ P  RL +   T+ SP  + SH N
Sbjct: 996  SRHPASDRPQPRLPVVMETLSSPPVQ-SHSN 1025


>SB_24100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 64  DSIESHIEWCND-IKSYAGCSNEDETFPYPIIEDKNRELALKLDMIDKDELDA 219
           DS +S+I+  N  + +Y GCSN+       +IED   +L    D I+K + DA
Sbjct: 53  DSWQSYIDKINQAVSTYRGCSNKGCGCYKDVIED---DLRRWKDGINKSDFDA 102


>SB_33100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 13  LLPDFTKRNTKVIGLSCDSIESHIEWCNDIKSYAGCSNEDETF 141
           L   F +  TK++G++   I+S ++  ND+ SY   +NE  TF
Sbjct: 38  LADSFLELTTKLVGMALP-IDSVVDLHNDLVSYYIINNELRTF 79


>SB_30266| Best HMM Match : Fzo_mitofusin (HMM E-Value=1.2)
          Length = 1052

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +1

Query: 190 DMIDKDELDATGIPLTARAVFIVDPNKKFRLSLLYP---ATTGRNFDEIVRVLDSLQLTD 360
           D  DKDE  AT    +A+ V   DP +    S +YP   +T+GR +      + + QL D
Sbjct: 605 DTADKDE--ATETKPSAKRVLSADPTRPKAFSPMYPTSTSTSGRRYKSSATDV-TYQLKD 661

Query: 361 KGKVATPVDWKM 396
              +   VD +M
Sbjct: 662 TVLLLPGVDVRM 673


>SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 306 CSSRIQE*QSKLLVRVHNENCT-GCERYSCCIQFILINHIQFQCQLSILI 160
           C  R+ +  SK++ ++ N  C+      + C+ F+ INH     QLS L+
Sbjct: 401 CFLRLND--SKIICKIENFMCSLVLSEQATCLAFVYINHFNNILQLSGLL 448


>SB_34131| Best HMM Match : DUF1289 (HMM E-Value=3.7)
          Length = 235

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 250 KLHGL*EVFLLHPIHPYQSYPVSMPALYSYPQ 155
           K+H L  +FL   I  Y  +P S+P ++ +PQ
Sbjct: 156 KVHMLTNMFL-KAIQSYTEFPESVPTMFPFPQ 186


>SB_7658| Best HMM Match : zf-B_box (HMM E-Value=0.51)
          Length = 472

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 250 KLHGL*EVFLLHPIHPYQSYPVSMPALYSYPQ 155
           K+H L  +FL   I  Y  +P S+P ++ +PQ
Sbjct: 393 KVHMLTNMFL-KAIQSYTEFPESVPTMFPFPQ 423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,832,111
Number of Sequences: 59808
Number of extensions: 356446
Number of successful extensions: 1032
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)