Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F12
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.26 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 95  LHHSICDSIESHDKPITLVFLLVKSGKSLSI 3
           L+    +++ESH+   T VFLL+K+   LS+
Sbjct: 686 LYKIYLNTMESHEVRCTAVFLLMKTNPPLSM 716


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 411 GATDCTGGSSSRDIP*GRNCGPAA 482
           G  +CT   +S  +     CGPAA
Sbjct: 154 GTVNCTSSIASSGVVSAGECGPAA 177


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 178 PALYSYPQLLGTEMFH 131
           P+ Y YP L G   FH
Sbjct: 171 PSFYIYPSLQGDGKFH 186


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 178 PALYSYPQLLGTEMFH 131
           P+ Y YP L G   FH
Sbjct: 171 PSFYIYPSLQGDGKFH 186


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -1

Query: 231 RYSCCIQFILINHIQFQCQLSILILNY 151
           + SC + F++  H   +C+L +  L++
Sbjct: 160 KLSCAMNFLIYPHDTQECKLQMESLSH 186


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 386 STGVATFPLSVNCRESNTRTISSKFLPVVA 297
           ++  AT P++  C E N +  S     VVA
Sbjct: 361 ASSAATLPITFRCLEENNKIDSRVTRFVVA 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,519
Number of Sequences: 438
Number of extensions: 3008
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)