Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F12
(507 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 141 3e-34
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)... 62 2e-10
At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat... 61 4e-10
At3g09180.1 68416.m01090 expressed protein 31 0.45
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 30 1.0
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 29 1.4
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 29 1.4
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 29 1.4
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 29 1.4
At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik... 29 2.4
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 28 3.1
At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domai... 28 3.1
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 28 4.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 5.5
At2g11775.1 68415.m01265 expressed protein 27 5.5
At3g14180.1 68416.m01792 expressed protein similar to 6b-interac... 27 7.3
At1g20760.1 68414.m02600 calcium-binding EF hand family protein ... 27 7.3
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR... 27 9.6
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 141 bits (341), Expect = 3e-34
Identities = 72/167 (43%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Frame = +1
Query: 10 KLLPDFTKRNTKVIGLSCDSIESHIEWCNDIKSYAGCSNEDETFPYPIIEDKNRELALKL 189
K +F KR K++GLSCD ++SH +W DI+++ N YPII D N+E+ +L
Sbjct: 55 KYAHEFDKRGVKLLGLSCDDVQSHKDWIKDIEAF----NHGSKVNYPIIADPNKEIIPQL 110
Query: 190 DMIDKDELDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQLTDK-- 363
+MID E G +RA+ IV P+ K +LS LYP+TTGRN DE++R LDSL + K
Sbjct: 111 NMIDPIE---NG---PSRALHIVGPDSKIKLSFLYPSTTGRNMDEVLRALDSLLMASKHN 164
Query: 364 GKVATPVDWKMGDECMVLPTVPEDQVAEIFPEGVTVVPLPSGKNYLR 504
K+ATPV+WK ++ P V +++ ++FP+G LPS K YLR
Sbjct: 165 NKIATPVNWKPDQPVVISPAVSDEEAKKMFPQGFKTADLPSKKGYLR 211
>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
identical to SP|Q96291 2-cys peroxiredoxin BAS1,
chloroplast precursor {Arabidopsis thaliana}; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 266
Score = 62.5 bits (145), Expect = 2e-10
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Frame = +1
Query: 22 DFTKRNTKVIGLSCDSIESHIEWCNDIKSYAGCSNEDETFPYPIIEDKNRELALKLDMID 201
+F K NT+V+G+S DS+ SH+ W + G + YP+I D + ++ ++
Sbjct: 132 EFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGD----LNYPLISDVTKSISKSFGVLI 187
Query: 202 KDELDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQ-LTDKGKVAT 378
D+ GI L R +FI+D + S + GR+ DE +R L +LQ + +
Sbjct: 188 HDQ----GIAL--RGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVC 241
Query: 379 PVDWKMGDECM 411
P WK G++ M
Sbjct: 242 PAGWKPGEKSM 252
>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
very strong similarity to SP|Q96291 2-cys peroxiredoxin
BAS1, chloroplast precursor {Arabidopsis thaliana};
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 273
Score = 61.3 bits (142), Expect = 4e-10
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Frame = +1
Query: 22 DFTKRNTKVIGLSCDSIESHIEWCNDIKSYAGCSNEDETFPYPIIEDKNRELALKLDMID 201
+F K NT+V+G+S DS+ SH+ W + G + YP++ D + ++ ++
Sbjct: 139 EFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGD----LNYPLVSDITKSISKSFGVLI 194
Query: 202 KDELDATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQ-LTDKGKVAT 378
D+ GI L R +FI+D + S + GR+ DE +R L +LQ + +
Sbjct: 195 PDQ----GIAL--RGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDEVC 248
Query: 379 PVDWKMGDECM 411
P WK G++ M
Sbjct: 249 PAGWKPGEKSM 259
>At3g09180.1 68416.m01090 expressed protein
Length = 402
Score = 31.1 bits (67), Expect = 0.45
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +1
Query: 10 KLLPDFTKRNTKVIGLSCDSIESHIEWCNDIKSYAGCSNEDET-FPYPIIEDKNR-ELAL 183
K LPD R K++ S + W S G ++D T PI + ++ L
Sbjct: 195 KTLPDIQSRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKPIFQSSSKLRSGL 254
Query: 184 KLDMIDKDELDATGIPLTARAVFIVDP 264
+ +++DK + P RA+ + P
Sbjct: 255 QTEVVDKIAVIELSFPSLFRAIVSLSP 281
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 91 CNDIKSYAGCSNEDETFPYPIIEDKNRELALKLDMIDKDEL 213
C D++ G + +D+ YP++ D E+ + D I + L
Sbjct: 525 CRDVQLRCGAARDDDEDDYPLLSDVEMEMESEADKIISEHL 565
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -3
Query: 430 PVQSVAPYTRHPSSNPPASRLSLYQSTVESPTHELSHRNF 311
P++SV P ++ PA + SL S+ E+P +LSHR+F
Sbjct: 72 PLRSVTPLPISSKNSNPALQKSL--SSKENPNPKLSHRSF 109
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -3
Query: 430 PVQSVAPYTRHPSSNPPASRLSLYQSTVESPTHELSHRNF 311
P++SV P ++ PA + SL S+ E+P +LSHR+F
Sbjct: 72 PLRSVTPLPISSKNSNPALQKSL--SSKENPNPKLSHRSF 109
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 487 RRAAGPQLRPQGISLLLDPPVQSVAPYTRHPSSN--PPASRLSLYQSTVESPTH 332
R +GP+ R G S + PP + R P S P +RL+ Q PTH
Sbjct: 2108 REKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPRETRLAQQQRWPNQPTH 2161
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -3
Query: 487 RRAAGPQLRPQGISLLLDPPVQSVAPYTRHPSSN--PPASRLSLYQSTVESPTH 332
R +GP+ R G S + PP + R P S P +RL+ Q PTH
Sbjct: 2107 REKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPRETRLAQQQRWPNQPTH 2160
>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
protein GI:12006424 from [Arabidopsis thaliana];
contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
SAP domain; contains TIGRfam profile TIGR00578:
ATP-dependent DNA helicase ii, 70 kDa subunit
Length = 621
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 214 DATGIPLTARAVFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSL 348
DA + ++ + + P+K+F ++L Y G N DE+ + S+
Sbjct: 202 DAQDLGISIELLPLSQPDKQFNITLFYKDLIGLNSDELTEFMPSV 246
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 197 LIRMNWMQQEYLSQPVQFSLWTLTRSFDCHSCIRLLQEEISMR*F 331
L R+N+ + +Y QPV + L+R D + +++ E++ R F
Sbjct: 519 LTRLNFFRNDYFRQPVNLKIEILSRLCDDMTDAEVVRAELNKRSF 563
>At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 423
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 34 RNTKVIGLSCDSIESHIEWCND-IKSYAGCSNEDETFPYPIIEDKN-RELALKLDMIDKD 207
R K I +S D + ++E + I+S E+ PYP I+D++ E L+L+M D +
Sbjct: 311 RVMKDIKISADDVHDYLEELEETIESQKQVEKALESAPYPDIDDEDIEEELLELEM-DLE 369
Query: 208 ELDATGIPLTA 240
+ +P T+
Sbjct: 370 SESSQVLPATS 380
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 64 DSIESHIEWCNDIKSYAGCSNEDETF 141
DS+E H EWC I C ++ F
Sbjct: 489 DSLERHCEWCGHIADLIDCRTCEKLF 514
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 7 LKLLPDFTKRNTKVIGLSCDS-IESHIEWCNDIKS 108
LKLLP +T TK +GL D I+ W N + S
Sbjct: 903 LKLLPLYTLALTKGVGLRMDGRIDDRSFWINHVSS 937
>At2g11775.1 68415.m01265 expressed protein
Length = 109
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -3
Query: 505 SLGNSCRRAAGPQLRPQGISL-LLDPPVQSVAPYTRHPSSNPPASRLS 365
S GN+ R P Q L PP S P H ++ PP +RL+
Sbjct: 26 SQGNASRNCDPPSPTSQNQQAGLSPPPSNSNTPNQSHSATQPPTARLN 73
>At3g14180.1 68416.m01792 expressed protein similar to
6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
GI:18149189
Length = 443
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 436 DPPVQSVAPYTRHPSSNPPASRLSLYQSTVESPTHELS 323
D ++S + PSS+PPA R+++ ++ P++ L+
Sbjct: 4 DEDIRSQGSDSPDPSSSPPAGRITVTVASAGPPSYSLT 41
>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 1019
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 493 SCRRAAGPQLRPQGISLLLDP-PVQSVAPYTRHPSSNPPAS 374
S R AAGP+ RP +S P PV SV HP P S
Sbjct: 160 SLRPAAGPEYRPSALSGQFQPVPVGSVT----HPPQPVPTS 196
>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
class), putative (RPS4) domain signature TIR-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPS4 (GI:11357255). False intron created at
intron 2 to escape a frameshift in the BAC sequence.
Length = 1217
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 247 VFIVDPNKKFRLSLLYPATTGRNFDEIVRVLDSLQLTDKGKVATPVD 387
V+ D +K L Y G++F E +D KGK PV+
Sbjct: 1109 VYAKDKDKNSALETKYDMLIGKSFQETSEGVDGRVKKTKGKYVMPVE 1155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,774,801
Number of Sequences: 28952
Number of extensions: 252927
Number of successful extensions: 843
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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