Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F11
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 30 0.24
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.9
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 3.9
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 25 5.1
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.1
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 5.1
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 6.8
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 9.0
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 29.9 bits (64), Expect = 0.24
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +1
Query: 61 LPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLP 240
LPE+E E T ++ G+G P K K T+ E E ++ +T+P ++ L
Sbjct: 427 LPEEERE-TYTLEEGLGLPSKSIYKKTIKLVYTSEHAEEMFKALERMPCLTLPLVISRLE 485
Query: 241 APKVVWSHNAKPLSGG 288
W + L G
Sbjct: 486 EKNEEWKSVKRSLQPG 501
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 513 NIT*KLLQFFIETHNCHL-SLLRILTVSFMLTS 418
N+ +L +FI HN +L SL +I T+ FM+ +
Sbjct: 3857 NLAESVLDYFINVHNSNLDSLSKISTLFFMVAN 3889
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 5 TVSPATIEPQASVFSSRQHSQKTRANTLAKSTMESANPKSTL 130
T+S ++ P +S FSS S K+ ++ + + S+ STL
Sbjct: 342 TISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 49 FKTTLPEDEGEYTCEVDNGVGKPQK--HSLKLTVVSAPKYEQ-KPEKVIVVKHGQDVTIP 219
F+T LPED ++ +G+PQK H++ L+ + + +Q PE+ + G + P
Sbjct: 101 FRTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTPEEDERLLEGFFLHGP 160
Query: 220 C 222
C
Sbjct: 161 C 161
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 286 GRATVSDSGLVIKGVQKGDTGYYGCRAT-NEHGDKYFETLLQ 408
G AT S +GLV V Y G HGD Y+E LL+
Sbjct: 230 GDATWSHTGLVPITVNLITGAYVGRNIRLGSHGDSYYEYLLK 271
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 19 HNRTSGKRLLFKTTLPEDE--GEYTCEVDNGVGKPQKHSLKLTVVSAP 156
+N SG L TT+P DE ++T +VD + SL L + S+P
Sbjct: 305 NNNKSGDSLEMSTTIPSDEENEDFTSKVD--AMEIHSGSLPLNIDSSP 350
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 468 CHLSLLRILTVSFMLTSLVN 409
C L LR+LT SF LTS N
Sbjct: 135 CSLQRLRVLTQSFELTSKYN 154
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 292 PCHRLEASRYGSRRPWALADRSPCTES*HPVRVSQRSPF 176
P L+ + YG RRP L+ SP + + +S F
Sbjct: 27 PVSSLDTNNYGQRRPSLLSGTSPTSSFFNSSMISSNYTF 65
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 22 NRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKY 162
NRTS F TTLP E+T E N + K LK + K+
Sbjct: 786 NRTSRYMHTFDTTLPMQNDEFTDESVNFENR-WKQELKTPISRFSKF 831
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,862
Number of Sequences: 5004
Number of extensions: 41202
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -