Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F11
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 32 0.24
07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657... 30 0.97
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 30 1.3
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.0
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 3.9
08_02_1131 + 24523435-24523447,24526425-24527509 28 5.2
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 28 5.2
12_02_0298 + 17041206-17041712 27 9.0
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 27 9.0
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 112 KPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLPAP 246
+P +H ++ + +P ++ E + + HG D + C TG PAP
Sbjct: 77 QPLEHGVEDEIDGSPYHDALGEHYVGILHGVDASPACSRTGAPAP 121
>07_03_1482 -
26864793-26865043,26865325-26865454,26865564-26865771,
26867529-26867599,26867875-26867884,26869562-26870310
Length = 472
Score = 30.3 bits (65), Expect = 0.97
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +1
Query: 145 VSAPKYEQKPEKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNA--KPLSGGRATVSDSGLV 318
V A + + E V+VV GQDV CK G ++ S N+ K + G +S G
Sbjct: 370 VDAKDFAGECEAVVVVAKGQDVQGTCKY-GTRVDYILASPNSPYKFVPGSYTVISSKGTS 428
Query: 319 IKGVQKGDTGYYGCRATNEHGDKYFETLLQVN 414
+ K D + T+E + ++++N
Sbjct: 429 DHHIVKVDVTIQDKKETDEESGNQRQRVVKIN 460
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +1
Query: 7 RITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVI 186
RI R R +RL +P ++T +D +G ++ LK A + +K I
Sbjct: 56 RIQRQRRVLKQRL----KVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEAKKPI 111
Query: 187 VVKHGQDVTIPCKVTGLPAPKVVWSHNAKPL 279
VVK+G D + + A VV +H+ P+
Sbjct: 112 VVKYGLD-HVTYLIEQSKAQLVVIAHDVDPI 141
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 238 PAPKVVWSHNAKPLSGGRATVSDSGLVIKGVQKGDTG 348
PAPK V S A SG + SDSG +G D G
Sbjct: 1206 PAPKAVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRG 1242
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 245 PRSS-GAITRSL*AVAGLRSVTAVWSSKAYKRVTRDTTAAELLTSTEINT 391
PRSS G +TRS V L V SSK +R+ ++ AA TST T
Sbjct: 42 PRSSSGRLTRSRAKV--LEESAGVSSSKKKRRIEEESPAATTTTSTTATT 89
>08_02_1131 + 24523435-24523447,24526425-24527509
Length = 365
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = -1
Query: 277 EASRYGSRRPWALADRSPCTES*HPVRVSQRSPFQASARTSVH*LQSISKSAFGVCRLHC 98
EA R G R P+ + P RV+ PF A+A +V L ++ +
Sbjct: 147 EAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRE 206
Query: 97 RLRKCIRPRLLG 62
LR C P L G
Sbjct: 207 TLRTCEWPTLAG 218
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 178 KVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVS 303
+ +VVKHG+ VT P + + H +PLSG A V+
Sbjct: 265 QAVVVKHGEAVTPPSRQDA--TKNITDVHKHQPLSGEHAIVA 304
>12_02_0298 + 17041206-17041712
Length = 168
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 244 PKVVWSHNAKPLSGGRATVSDSGLVIKGVQKG 339
P WS + KP G A+ G++++ ++G
Sbjct: 135 PNSAWSKSGKPTEAGGASARKGGVLVRKEERG 166
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 305 TAVWSSKAYKRVTRDTTAA 361
+A W+ K YK +T D TAA
Sbjct: 614 SAAWTEKRYKELTADVTAA 632
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,463
Number of Sequences: 37544
Number of extensions: 292373
Number of successful extensions: 850
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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