Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F10
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            29   0.38 
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   0.66 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   3.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.1  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    24   8.1  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 15  LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 122
           +  V  D C+R  D+ +P  I  +YQ  +P + AD+
Sbjct: 77  MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 117 DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL 245
           DIV  F      ++  K  +   +T+LVD   SK +T+I  YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 104 WHFELINVSDGVRLVRVGAAHASVRQ 27
           W  +LIN++DG+  +++   H+   Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 159  SYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSXYP 269
            S+K +V PL TQL  ++ +  ITD++   +  T+ +P
Sbjct: 1204 SFKRVVTPLGTQLRKDILNDSITDME-NTSSFTASFP 1239


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 412 IKSITFFSYWSKVSHPV*PKGI 347
           + +I   SY+  VSHPV P G+
Sbjct: 52  VDTINPASYFGTVSHPVTPAGV 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,187
Number of Sequences: 5004
Number of extensions: 27288
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)