Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F10
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228...    34   0.039
01_06_0240 + 27794741-27795466                                         28   3.4  
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484...    27   7.8  
04_04_0236 + 23825368-23825763,23826229-23828667                       27   7.8  

>10_08_0824 +
           20821724-20822137,20822457-20822543,20822729-20822829,
           20822917-20822967,20823616-20823790,20823878-20824192,
           20824504-20824707,20824799-20825314,20825400-20825609,
           20826092-20826280,20827254-20827405,20827685-20827837,
           20827925-20828006,20828086-20828475
          Length = 1012

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 132 FETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL-AGHTSXYPYPILYDTDLKLKS 308
           FET  + E S  D    L+T+++DNL  +     + Y  +  TS Y YP L D +  L  
Sbjct: 540 FETKAALENSSSDDDSQLLTRIIDNLVDESHESNQTYSDSNDTSLYNYPSLSDWN-DLNE 598

Query: 309 SKLHFDDXERYE 344
            ++ F+D ER E
Sbjct: 599 VEI-FEDIERRE 609


>01_06_0240 + 27794741-27795466
          Length = 241

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 15 LPAVLPDACVRCTDADKPHAIGDV 86
          +PA  P A VRCT A KP A G +
Sbjct: 24 IPAATPSAIVRCTAAPKP-ATGSI 46


>12_01_0591 -
           4835894-4836328,4836343-4837882,4838911-4839050,
           4840051-4840605
          Length = 889

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 137 FEGDDNICLLVWHFELINVSDGVR 66
           FEGDD IC+L     L+ +  G+R
Sbjct: 753 FEGDDGICILAKLPSLVQLDLGIR 776


>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 240 YLAGHTSXYPYPILYDTDLKLKSSKLHFDDXERYERMPFGQTGCDTFDQYEKNV 401
           Y+   T+   +   +DT +KL+S +  +DD   +++ P   +G   F++   NV
Sbjct: 588 YITPETTIKTFIEQFDTAMKLRSDREAYDDFRSFQQRPQVLSGL-LFEEQFANV 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,639,247
Number of Sequences: 37544
Number of extensions: 169514
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)