Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F10
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR ...    29   1.2  
At3g48470.1 68416.m05291 expressed protein                             28   2.2  
At5g42000.1 68418.m05113 ORMDL family protein contains Pfam doma...    27   6.6  
At1g63360.1 68414.m07162 disease resistance protein (CC-NBS-LRR ...    27   6.6  

>At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 884

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 69  HAIGDVYQLKVPNKQADIVVSFETTQS-NEQSYKDLVMPLITQLVDNLKSKQITDIKIY 242
           + IG+    K   ++ D  V   TT + N  + K+ ++P++    DNL+S+ +    +Y
Sbjct: 355 NVIGETMACKKTTQEWDRAVDVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFLY 413


>At3g48470.1 68416.m05291 expressed protein
          Length = 1017

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +3

Query: 42  VRCTDADKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKS 215
           VR +  +  H  GD+ +  V  + +DI +  E   + E+  + L+  L+T+  ++L++
Sbjct: 650 VRASPDELTHIAGDLARTLVQVRCSDIAIEGEEDSAEEKRQRALIALLVTRPFESLET 707


>At5g42000.1 68418.m05113 ORMDL family protein contains Pfam domain
           PF04061: ORMDL family
          Length = 154

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 192 QLVDNLKSKQITDIKIYL-AGHTSXYPYPILY 284
           QL  N K   +  + +YL A HT+ Y +P+L+
Sbjct: 94  QLTRNRKFLTVVPVVLYLIASHTTDYQHPMLF 125


>At1g63360.1 68414.m07162 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 884

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 165 KDLVMPLITQLVDNLKSKQITDIKIYLA 248
           +D V+PL+    DNLK +Q+    +Y A
Sbjct: 385 EDKVLPLLKYSYDNLKGEQVKSSLLYCA 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,808,858
Number of Sequences: 28952
Number of extensions: 137159
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)