Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F09
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    26   3.8  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   5.1  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    26   5.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.1  

>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 43  NAFKINYTYLDQPRI*NWLVKLTAGLSI*TNILCSAWSLKQCSLGANMKLIPINLY 210
           N F +  T++       W    +  + I  +I  + W+L    L ANM L  +NL+
Sbjct: 202 NGFILIVTFICVRIAWGWFSAYSTAIEILNHINVAPWALSLFYLAANMSLNCLNLF 257


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 209 YKLIGISFMFAPRLHCFKLHAEHKILVYMDKPAVSLTSQFYILG 78
           + L+G+  +F P +H  K+ +  +ILV M    + L   FYI+G
Sbjct: 224 FVLMGLFGIF-PVIHALKIFSFSEILVRMGLVWLLLQGLFYIVG 266


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 158 KLHAE-HKILVYMDKPAVSLTSQFYILG*SKYV 63
           ++H E H++LVY+ K    +   +Y+LG + YV
Sbjct: 220 EMHEEAHQLLVYLQKEDDQILDIWYLLGWNCYV 252


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 164  CFKLHAEHKILVYMD 120
            C+KL+ EHKI+ Y +
Sbjct: 1179 CYKLNVEHKIITYQN 1193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,550
Number of Sequences: 5004
Number of extensions: 50605
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)