Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F09
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824     30   1.7  
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     29   2.3  
11_06_0750 + 26917239-26918071,26918319-26920773                       29   4.0  
05_05_0226 + 23442971-23443857,23444209-23446324                       29   4.0  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    28   5.2  

>02_02_0561 - 11515641-11516145,11516290-11517005,11517204-11517824
          Length = 613

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = -1

Query: 296 YLAAIIYVRILFICHRSLLNNTSLIICDPYKLIGISFMFAPRLHCFKLHAEHKILVYMDK 117
           +L  + Y R  F+CH        L +C     +G+  + +P L  +       I++Y   
Sbjct: 252 FLYDLFYTRYPFVCHAVTTTLPHLAMCAIMVTVGVLTLLSPALRHYHPTHHRSIMLYDIN 311

Query: 116 PAVSLTSQFYIL 81
             V LT    +L
Sbjct: 312 LDVVLTMAIIVL 323


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 139 LCSAWSLKQCSLGANMKLIPINLYGSHIM 225
           +C  W LK  S G N+ ++P ++ G H +
Sbjct: 590 ICKLWHLKYLSFGYNINVLPRSIEGLHCL 618


>11_06_0750 + 26917239-26918071,26918319-26920773
          Length = 1095

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 139 LCSAWSLKQCSLGANMKLIPINLYGSHIM 225
           +C  W LK  S G N+  +P ++ G H +
Sbjct: 658 ICKLWHLKYLSFGGNISELPRSIEGLHCL 686


>05_05_0226 + 23442971-23443857,23444209-23446324
          Length = 1000

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 139 LCSAWSLKQCSLGANMKLIPINLYGSHIM 225
           +C  W LK  S G+N+  +P ++ G H +
Sbjct: 613 ICKLWHLKYLSFGSNISELPRSIDGLHCL 641


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 49  FKINYTYLDQPRI*NWLVKLTAGLSI*TNI 138
           F  N  +L+ PRI NW V +  G+S  TN+
Sbjct: 682 FLANLRHLELPRIDNWNVYMPCGISELTNL 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,990,221
Number of Sequences: 37544
Number of extensions: 276416
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)