Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F09
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           31   0.57 
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)              29   4.1  
SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)                28   7.1  

>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 91   NWLVKLTAGLSI*TNILCSAWSLKQCSLGANMKLIPINLYGSHI 222
            N+   +T+G  +  ++L   WS + C LG+N  L  I+ + +H+
Sbjct: 1129 NYTFDVTSGTCMYWDVLLQRWSSRGCWLGSNSSLTHIHCFCNHL 1172


>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
          Length = 1617

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -1

Query: 230  SLIICDPYKLIGISFMFAPR---LHCFKLH-AEHKILVYMDKPAVSLTSQFYIL 81
            S +I DP+K I I  +F P+   LH  KLH     +L    K + ++T    IL
Sbjct: 1427 SKLIIDPHKTIDIEVLFTPKMAGLHLAKLHVTSTPLLPEGQKTSEAMTESLPIL 1480


>SB_11016| Best HMM Match : DUF726 (HMM E-Value=1.3e-08)
          Length = 442

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 218 CDPYKLIGISFMFAPRLHCFKLHAEHKIL 132
           C P  LIG SF      HC K  A+ K+L
Sbjct: 302 CRPVSLIGFSFGARVIFHCLKALAKMKVL 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,271,624
Number of Sequences: 59808
Number of extensions: 355707
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)