Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F09
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical...    29   3.6  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   4.7  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical
           protein M04D8.4 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 175 RDCIVLNSMQSTKY*FIWISLQ*V*QASFIFWVDLNMYSLF*MHFLHSV-SGVN 17
           ++C  + S+Q      IW+ L    Q ++ FW+ LN  SLF  HF  +V S +N
Sbjct: 5   QECFHIISIQIEFLNNIWVRLMNYIQVNY-FWLGLNENSLFAEHFSTAVLSAIN 57


>AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical
           protein Y57A10A.24 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 27  LTLCKKCIQNKLYIFRSTQNIKLACQT 107
           L LCK C+Q     FR T N+++ CQ+
Sbjct: 181 LVLCKDCVQGVCAKFR-TSNVEVCCQS 206


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 150 MEFKTMQSRRKHEAYTDQFVWI 215
           ++FKTMQ + K +AYT Q ++I
Sbjct: 691 IDFKTMQEKLKRKAYTHQHLFI 712


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 491 KSQLLSFSVFALDE*HHTFHKHTQLSHRSLMES 589
           K  ++S  +++    HH  H H QL H  +++S
Sbjct: 246 KRDIISPPMYSSTPHHHNHHNHQQLQHHQVIKS 278


>U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical
           protein C03F11.1 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 556 MFVKCVMLFVKGKNTEA**LRFSTV*DISITYILNGY 446
           MFV+C      GKN ++  L  +++  I+IT++LNGY
Sbjct: 281 MFVQCERYGFSGKNPQSI-LYSNSLWFIAITFMLNGY 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,844,397
Number of Sequences: 27780
Number of extensions: 277094
Number of successful extensions: 459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)