Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F08
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.3  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   5.1  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   6.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.7  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    24   8.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     24   8.9  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    24   8.9  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 176  MLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLD 289
            M+ +D EP +S C  LL  +     D + MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 419 PIKDCTSVDLQCRHHLPLSR 360
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 205  KSRLQVRRQHTCLRFSDIALAVIVAEDF 122
            K RLQ R  +   +FS + LAV+ A+ F
Sbjct: 1055 KKRLQKRLGYNDTQFSKVKLAVLQAQSF 1082


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 117 KAKSSATMTARAISENLKHVCCLRTWS 197
           K K+S     R   EN+ H+CC  T S
Sbjct: 45  KDKNSTLKIDRLFEENVPHLCCQVTAS 71


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +2

Query: 281  NLDIDRAHANYRAITNLKRQFPQLRV---FLTVGGDDDTEDPQKYNL 412
            ++ +  AH  +    N  RQFP L V   F   G D        YNL
Sbjct: 950  SIALSTAHVQHGDTLNYSRQFPNLFVQGAFNRFGYDGSMPSKMSYNL 996


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 251 DTYKMVSLNENLDIDRAHANYRAI 322
           D Y+++ +N + D+    ANYR +
Sbjct: 9   DCYEILQVNHDSDLQEIKANYRKL 32


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 322 DRSIISVCPINVQILIE*NHFIC-VSLDAGRFVQQMGAERKSR 197
           DRS+    PI++ +L+    FIC ++     F+     ER  R
Sbjct: 189 DRSLFKFYPIDLFVLLLSQSFICIIAFGVSDFINFQKEERNFR 231


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +2

Query: 158  RESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKR 337
            +E + + L   +E   + C+ L  ++   Q D Y   + N++ + D        + NLK 
Sbjct: 1099 KEERRKELAIKIEQVTNSCSDLELRTNAEQ-DFY---AKNQDFEFDEIKRYEEQLLNLKN 1154

Query: 338  QFPQLRVFLTVGG 376
            +     V LT GG
Sbjct: 1155 ELGWTIVSLTAGG 1167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,911
Number of Sequences: 5004
Number of extensions: 31614
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)