Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F08
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0517 + 9054816-9055655 29 1.6
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 5.0
02_05_1001 + 33423562-33424098 27 5.0
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 27 6.6
01_05_0197 + 19143582-19143618,19143814-19144523 27 6.6
10_02_0002 - 4018145-4018545,4018563-4018605 27 8.7
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 27 8.7
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 27 8.7
01_06_0630 - 30723903-30724496 27 8.7
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 159 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 293
+++ H C+ W L S P+C LPA+ + + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 284 LDIDRAHANYRAITNLKRQFPQLRVFL 364
+ +D ANYRA+ L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399
>02_05_1001 + 33423562-33424098
Length = 178
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 303 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 199
CA S E + + S W PAD+ + WV ERA
Sbjct: 80 CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 296 RAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 403
RAH + + R+ RV VGG DD ED ++
Sbjct: 109 RAHPSLHVLVGWARRMIGFRVSTPVGGCDDEEDGRR 144
>01_05_0197 + 19143582-19143618,19143814-19144523
Length = 248
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +2
Query: 125 VLCYYDSKSYIRES-------QARMLPTDLEPALSFCTHLLYKSAGIQADTYKM 265
+ +YD KS IR+ + ++ D+E + F HL+ +S G+ D +K+
Sbjct: 132 ITSHYDGKSGIRKHILEMTHMENQLRSMDMEISDGFLVHLIMRSLGLNYDPFKI 185
>10_02_0002 - 4018145-4018545,4018563-4018605
Length = 147
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 293 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 403
DRA A+YR + + + G DDD DP++
Sbjct: 111 DRAVADYRNVARVWTRVVSFGTTRGFGSDDDPSDPER 147
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 186 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 299
RTW+ +F + CC S I FH+ RIW+ +G
Sbjct: 170 RTWTYIFGA---CC-----STTVFIPSFHNYRIWSFLG 199
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = +3
Query: 42 RPWSPSPGYW------R*RLRLPTTQHHLVAKAKSSA 134
R WSPS G W R RLPTT+ H + A
Sbjct: 433 RAWSPSVGDWLADRPRTLRFRLPTTKDHTTERISGLA 469
>01_06_0630 - 30723903-30724496
Length = 197
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 171 HVCCLRTWSLLFRSAPIC 224
HVCCL W S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,688,090
Number of Sequences: 37544
Number of extensions: 217803
Number of successful extensions: 594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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