Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F07
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57199| Best HMM Match : 7tm_1 (HMM E-Value=0)                       31   0.51 
SB_968| Best HMM Match : HC2 (HMM E-Value=2.5)                         28   4.8  
SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_49943| Best HMM Match : zf-nanos (HMM E-Value=9.2)                  27   8.4  
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)                   27   8.4  
SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37)                 27   8.4  
SB_16378| Best HMM Match : DCX (HMM E-Value=0.7)                       27   8.4  
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)                        27   8.4  

>SB_57199| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 374

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 47  ILSIFCRSSSPHARTNYFSSN*V---LLIQFPPLKYNVIFIIISTDR 178
           +LSI CR+   H  TNYF +N     L+I       N+I I+  T+R
Sbjct: 45  VLSIICRNRQMHTTTNYFIANMACSDLIIPIFVAPTNIIDILSGTNR 91


>SB_968| Best HMM Match : HC2 (HMM E-Value=2.5)
          Length = 292

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 211 QINRRKYILKTPVSRNN-YKYYIVFKW 134
           Q+N+   I+K   SR   YKY ++ KW
Sbjct: 81  QVNKHTVIIKCKTSRQQVYKYTVIIKW 107



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 211 QINRRKYILKTPVSRNN-YKYYIVFKW 134
           Q+N+   I+K   SR   YKY ++ KW
Sbjct: 209 QVNKHTVIIKCKTSRQQVYKYTVIIKW 235



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 211 QINRRKYILKTPVSRNN-YKYYIVFKW 134
           Q+N+   I+K   SR   YKY ++ KW
Sbjct: 17  QVNKYSVIIKCKTSRQQVYKYTVIIKW 43


>SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 VSIILNYLKSSWFGHVERMNDRRLTK 48
           ++ +L   +  W GHV RM+D R+ K
Sbjct: 285 INTMLQQAQLRWAGHVRRMSDTRIPK 310


>SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 VSIILNYLKSSWFGHVERMNDRRLTK 48
           ++ +L   +  W GHV RM+D R+ K
Sbjct: 436 INTMLQQAQLRWAGHVRRMSDTRIPK 461


>SB_49943| Best HMM Match : zf-nanos (HMM E-Value=9.2)
          Length = 153

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 VSIILNYLKSSWFGHVERMNDRRLTK 48
           ++ +L   +  W GHV RM+D R+ K
Sbjct: 4   INTMLQQAQLRWAGHVRRMSDTRIPK 29


>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 VSIILNYLKSSWFGHVERMNDRRLTK 48
           ++ +L   +  W GHV RM+D R+ K
Sbjct: 217 INTMLQQAQLRWAGHVRRMSDTRIPK 242


>SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)
          Length = 906

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 VSIILNYLKSSWFGHVERMNDRRLTK 48
           ++ +L   +  W GHV RM+D R+ K
Sbjct: 736 INTMLQQAQLRWAGHVRRMSDTRIPK 761


>SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37)
          Length = 565

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 VSIILNYLKSSWFGHVERMNDRRLTK 48
           ++ +L   +  W GHV RM+D R+ K
Sbjct: 431 INTMLQQAQLRWAGHVRRMSDTRIPK 456


>SB_16378| Best HMM Match : DCX (HMM E-Value=0.7)
          Length = 754

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 VSIILNYLKSSWFGHVERMNDRRLTK 48
           ++ +L   +  W GHV RM+D R+ K
Sbjct: 231 INTMLQQAQLRWAGHVRRMSDTRIPK 256


>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
          Length = 254

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 VSIILNYLKSSWFGHVERMNDRRLTK 48
           ++ +L   +  W GHV RM+D R+ K
Sbjct: 126 INTMLQQAQLRWAGHVRRMSDTRIPK 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,161
Number of Sequences: 59808
Number of extensions: 227603
Number of successful extensions: 502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)