Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F07
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = -1

Query: 343 LLKMFYLEVLTFDKSYF*IYLY*LTISLFVNIQFY----FNL*FY*V*QINRRKYILKTP 176
           + ++FYL ++      F +Y    T      IQ +    FN  FY +  I    YI+   
Sbjct: 117 ITQIFYLLIIVLAFERFLLYFLKSTERTLQIIQTFIHRHFNS-FYAIFAIKDALYIISWL 175

Query: 175 VSRNNYKYYIVFKWWKLY 122
           VS  NY++++ F +  +Y
Sbjct: 176 VSSGNYQFWLEFSYMTVY 193


>AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical
           protein Y73C8C.3 protein.
          Length = 826

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 199 RKYILKTPVSRNNYKYYIVFKW 134
           RK++ K P+  N +KY   F W
Sbjct: 220 RKFVEKFPICDNEFKYRTFFSW 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,736,957
Number of Sequences: 27780
Number of extensions: 182978
Number of successful extensions: 317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)