Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F07
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi...    31   0.73 
At2g31820.1 68415.m03886 ankyrin repeat family protein contains ...    28   3.9  

>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain
          Length = 478

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 15  NVPSHPRLLNSFCQSSVVHPLHMPEPTTFQVIKYY 119
           N P  P  +N + Q +  H L  P P  FQV  Y+
Sbjct: 432 NQPQFPAYMNPYSQFAGPHQLQQPPPPPFQVTLYH 466


>At2g31820.1 68415.m03886 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 662

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 99  K*LVRACGEDERQKIDKMNLKGE 31
           K L+R CG++ ++ + K NL+GE
Sbjct: 168 KELIRGCGDELKELLSKQNLEGE 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,746,421
Number of Sequences: 28952
Number of extensions: 160103
Number of successful extensions: 268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)