Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F06
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.4
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 3.2
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.2
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 26 4.2
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 5.6
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 5.6
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 7.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.3
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 25 7.3
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.3
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 25 7.3
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 25 9.7
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 9.7
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 25 9.7
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 9.7
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 9.7
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.7
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 418 SXKVLDFDDPNSARIANTYIENSGGGRVSNVLRS 519
S K L F +P+ A +NT++ G R SNV R+
Sbjct: 6 SEKTLSFLNPSRAS-SNTHLSREGTNRSSNVTRT 38
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 126 THNHKRWSRGIITLWNMDSDDRHSFRSERRKLQATQHSFHITEEAKHTYRRLXETHKR 299
T NH+ SR I LW +S + S+ L+ +H E K+T ++ +R
Sbjct: 36 TSNHQSISRIIGQLWRNESAQVKKYYSDLSALERQKHMLE-NPEYKYTPKKRSTVRRR 92
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 172 IWTLMTGIALGASGESYRQLSTAFILPKKQNTLI 273
+WTL+ ++LG+ +Y ++ +P NTL+
Sbjct: 5 VWTLLGALSLGSLTTAYGANASNSSVPTPDNTLV 38
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 544 SFSIRRNRPNGAHSKRDRRQNSRYTCSRYVPNSD 443
S + R PN A S+R+R QN V NSD
Sbjct: 39 SINSRSASPNKATSRRNRAQNGNSNGRASVDNSD 72
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 536 DSKKSSERSTFETRPPPEFSIYVFAIRAEFGSSKSNTXIDAPKSLCSV 393
+S + S ST PPP + A+ EF + K++ P+S +V
Sbjct: 260 ESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAV 307
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 195 SFRSERRKLQATQHSFHI 248
SFR+ER ++Q T FHI
Sbjct: 120 SFRTERLQIQLTDQRFHI 137
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 65 CYCDVDFNDRPRNFSIELLYHTQSQTVVTW 154
CY D F+D R E ++HT Q + TW
Sbjct: 208 CYADYAFDDILRVLPCEHVFHT--QCIDTW 235
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/39 (23%), Positives = 16/39 (41%)
Frame = +3
Query: 153 GIITLWNMDSDDRHSFRSERRKLQATQHSFHITEEAKHT 269
GII +W +E+ + FH+ + +HT
Sbjct: 2460 GIIRIWEKRLQSNAKLEAEKNNADRPKWRFHLLRQLQHT 2498
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 226 ACNFRRSLLKLCRSSESIFQ 167
AC ++S++ LC SS S+ Q
Sbjct: 362 ACTIKKSVIVLCTSSVSVMQ 381
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 520 PNGAHSKRDRRQNSRYTCSRYV 455
PNG R +++R+ C+RY+
Sbjct: 1061 PNGVFPNGTRLEHARFNCARYL 1082
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 541 FSIRRNRPNGAHSKRDRRQNSRYTCSRYVPNSDRRN 434
F R+ + +SKRD + C Y+PNS + N
Sbjct: 52 FENDRDNSHTMNSKRDEAGFACEVCQIYIPNSKKIN 87
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +3
Query: 138 KRWSRGIITLWNMDSDDRHSFRSERRKLQATQHSFHITEE 257
+ W +T WN D ++ F + R L S+H++++
Sbjct: 110 REWVNNSLT-WNQDDEEVSVFETTIRILGGLLSSYHLSQD 148
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = +1
Query: 334 TSRNYVFLDNDFVVYQDFRNTLQRDFGASXKVLDFDDPNSARIANTYIENSGGGRVSNVL 513
T +N D VY G L F+DPN+ I + +S R+S V
Sbjct: 564 TLKNASKNDEGNFVYLRLNFVSPGQIGGKKDELPFEDPNAQFIRSFTFRSSNNSRMSQVF 623
Query: 514 R 516
+
Sbjct: 624 K 624
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 214 ESYRQLSTAFILPKKQNTLIDGXQKLTNVV--WDPATSAV 327
E YR L + F +K+ +G KLT + W+P T +V
Sbjct: 26 EEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNPETYSV 65
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 181 LMTGIALGASGESYRQLSTAFILPKKQNTLIDGXQKLTNVVWDPATSAVSLTSRNYVF 354
L + I A + +R L A +L + +NT IDG LT S L+S F
Sbjct: 604 LSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEF 661
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +1
Query: 328 SLTSRNYVFLDNDFVVYQDFRNTLQRDFGAS-XKVLDFDDPN----SARIANTYIEN 483
S + RNY + D +Y+D + LQ D+ +++F++ N + ++AN EN
Sbjct: 393 SKSPRNYEIVLLDHGLYRDIPHELQVDYANMWLNIINFNEKNLKFYAKKVANVSDEN 449
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 417 IDXSVRFRRSEFGTYREHVYREFWRRSRFECAP 515
++ +R +S F + H YR FW +S P
Sbjct: 1 MNRQLRTVKSCFSLQKTHQYRSFWIQSSLRALP 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,651
Number of Sequences: 5004
Number of extensions: 44591
Number of successful extensions: 130
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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