Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F06
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0619 + 26652923-26653267,26653440-26654273 38 0.004
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 31 0.61
11_04_0016 + 12280846-12280946,12281306-12281326,12281364-122813... 31 0.80
06_02_0309 + 14128994-14129312,14129937-14130064,14130220-141304... 29 1.8
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223 29 2.4
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037 29 2.4
09_04_0388 + 17234485-17234583,17234710-17234893,17235252-172360... 29 2.4
10_08_0291 + 16556823-16557167,16557255-16557497,16557568-16558131 28 4.3
01_06_1506 + 37830468-37830600,37830703-37830920,37832078-378325... 28 4.3
04_03_0974 + 21367304-21369634 28 5.6
10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430 27 7.5
08_02_0440 + 17192122-17192691,17193947-17194912 27 7.5
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 27 9.9
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 38.3 bits (85), Expect = 0.004
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Frame = +1
Query: 133 ITNGGHVVLSPFGIWTLMTGIALGASGESYRQLSTAFILPKKQNTLIDGXQKLTNVV--W 306
IT + + SP G+ + +A G GE+ RQL AF+ + + L L + W
Sbjct: 16 ITEQSNFMFSPLGLRAGLALLATGTDGETLRQL-LAFLGSQHIHQLNAASAGLLAEMRAW 74
Query: 307 DPATSAVSLTSRNYVFLDNDFVVYQDFRNTLQRDFGASXKVLDFDDPNSARIA--NTYIE 480
+ A +F+D + +F++T GA + +DF + +A A N +I
Sbjct: 75 PQLSFAAG------IFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFIS 128
Query: 481 NSGGGRVSNVLRSDDFFES 537
+ GR++N + F S
Sbjct: 129 QATNGRLNNTISPGTFGSS 147
>12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 31.1 bits (67), Expect = 0.61
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +1
Query: 193 IALGASGESYRQLSTAFILPKKQNTLIDG-----XQKLTNVVWDPATSAVSLTSRNYVFL 357
I+ ASG++Y+ STA+ PK +NT G QK ++ W P +L++ N L
Sbjct: 712 ISQTASGDNYQLGSTAYSSPKVENTDATGISVLLLQKSSSNKW-PVVEGRTLSATN--IL 768
Query: 358 DNDFVVYQDFRNTLQRDFGA-SXKVLDFDDPNSARIANTYIENSGGGR 498
++ +D + ++R FG S D S+R ++ E G+
Sbjct: 769 CSEPYYTRDSISAMRRSFGRDSSSATSSIDLGSSRQSDVRFERLRSGK 816
>11_04_0016 +
12280846-12280946,12281306-12281326,12281364-12281370,
12282062-12282178,12282305-12282352,12282411-12282415,
12282432-12282456,12283119-12283307
Length = 170
Score = 30.7 bits (66), Expect = 0.80
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 144 WSRGIITLWNMDSDDRHSFRSERRKLQ 224
W+ GI N+D+D+RH F++ R ++Q
Sbjct: 19 WTAGIRAQGNVDADERHQFKNGRDQVQ 45
>06_02_0309 +
14128994-14129312,14129937-14130064,14130220-14130453,
14131323-14131575,14133281-14133468
Length = 373
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 181 LMTGIALGASGESYRQL---STAFILPKKQNTLIDGXQKLTNVVWDPATSAV 327
L+TG+A + G Y L STA + N D QKLT+++ + A + +
Sbjct: 129 LLTGVAFASGGSGYDPLTSISTAISSSGQLNLFSDYKQKLTSLIGEEAMTRI 180
>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
Length = 437
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 382 DFRNTLQRDFGASXKVLDFDDPNSARIANTYIENS 486
D+ N L+ D G LDF SA +A TY++N+
Sbjct: 188 DWLNWLKSDVGFDGWRLDFAKGYSATVAKTYVDNT 222
>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
Length = 438
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 382 DFRNTLQRDFGASXKVLDFDDPNSARIANTYIENS 486
D+ N L+ D G LDF SA +A TY++N+
Sbjct: 188 DWLNWLKSDVGFDGWRLDFAKGYSAAVAKTYVDNT 222
>09_04_0388 +
17234485-17234583,17234710-17234893,17235252-17236057,
17236148-17236432
Length = 457
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 382 DFRNTLQRDFGASXKVLDFDDPNSARIANTYIENS 486
D+ L+RD G LDF SA +A TY++N+
Sbjct: 207 DWLRWLRRDVGFDGWRLDFAKGYSAAVARTYVQNA 241
>10_08_0291 + 16556823-16557167,16557255-16557497,16557568-16558131
Length = 383
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +1
Query: 328 SLTSRNYVFLDNDFVVYQDFRNTLQR--DFGASXKVLDFDDPNSARIANTYIENSGGGRV 501
SL S+ + D + +++ LQR D GA ++ P A + GGG
Sbjct: 172 SLRSQQFALPDYVRFLISEYKKILQRLYDMGARRVLVTGTGPLGCAPAERALRGRGGGCA 231
Query: 502 SNVLRSDDFFESRM 543
V+R+ + F ++
Sbjct: 232 PQVMRAAELFNPQL 245
>01_06_1506 +
37830468-37830600,37830703-37830920,37832078-37832529,
37832595-37833402,37834986-37835073,37835196-37835299,
37835402-37835483,37836670-37836923
Length = 712
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 289 LTNVVWD-PATSAVSLTSRNYVFLDNDFVVYQDFRNTLQRDFGASXKVLDFDDPNSARIA 465
+T++ WD P SA S + N + D+ +F + + + DFD P
Sbjct: 584 VTHIGWDSPTGSAASPSWMNDMKGSPDYSSLNNFGPSTGTSWTSQVCSTDFDHPQDISPF 643
Query: 466 NTYIENSG 489
Y+EN+G
Sbjct: 644 GLYVENAG 651
>04_03_0974 + 21367304-21369634
Length = 776
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 190 GIALGASGESYRQL---STAFILPKKQNTLIDGXQKLTNVVWDPATSAVSLTS 339
G GA S+R L S IL K + + LTNV PA AVS+T+
Sbjct: 654 GCPAGAGAASHRDLNYPSFMVILNKTNSATRTFTRTLTNVAGSPAKYAVSVTA 706
>10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430
Length = 306
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 373 QRNHCLKTRNFYWLGTL 323
+R HC + YWLGTL
Sbjct: 286 RREHCARHTRMYWLGTL 302
>08_02_0440 + 17192122-17192691,17193947-17194912
Length = 511
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 38 LYLLFIIGTCYCDVDFNDRPRNFSIELLYHTQSQTVVTW 154
+Y + I G +C V+ ND + F +++YH +VT+
Sbjct: 209 MYTVLIYG--WCKVNRNDMAQKFLKDMIYHGIEPNIVTY 245
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 414 CIDXSVRFRRSEFGTYR-EHVYREFWRRSRFECAPFGRFL 530
C + ++F EF + EHV+R W++++F A + RF+
Sbjct: 253 CKNFYIKFSSVEFDEIKMEHVFRTCWKQNKFG-AQYIRFI 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,632,355
Number of Sequences: 37544
Number of extensions: 287272
Number of successful extensions: 697
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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