Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F06
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)               31   0.82 
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_18665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.2e-17)          29   1.9  
SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_26785| Best HMM Match : Mod_r (HMM E-Value=2)                       28   4.4  

>SB_55151| Best HMM Match : Adeno_shaft (HMM E-Value=6.4)
          Length = 402

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = -2

Query: 508 HSKRDRRQNSRYTCSRYVPNSDRRNLTLXSMHRNLSAAYS*SLDIQRNHCLKTRNFYWLG 329
           H  RDR+Q+ R  CS     +DR + TL   H   +       D +R   ++ R      
Sbjct: 292 HRPRDRQQSRRTACSPPHSTTDREDGTLVERHAPQAPRSGPGHDKRRTVTVRERESKPTF 351

Query: 328 TLHLSPDPKRR 296
              L P P RR
Sbjct: 352 PPPLKPSPNRR 362


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 180  SDDRHSFRSERRKLQATQHSFHITEEAKHTYRRLXETHKRRLGSGDKCSVPNQ 338
            S+ RH  R +R+K        H TE   H    L +T   + G G   SV NQ
Sbjct: 1301 SNRRHRNRPQRKKKGKKAAMNHATEAEAHFMFELAKTVLTKAGGGSTASVFNQ 1353


>SB_18665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.2e-17)
          Length = 269

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 109 YRTFVPHTITNGGHVVLSPFGIWTLMTGIALGASGESYRQLSTAF 243
           YR + P T+ +G H +    G  TL+TG+     G+SY    T+F
Sbjct: 184 YRAWCPLTV-HGSHWLQICLGHVTLVTGVVTQRRGDSYEVWVTSF 227


>SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -3

Query: 534 FEEIVRTEHIRNATAARILDIRVRDTCRI 448
           F E+V T+  +N + ++++DI +RD  ++
Sbjct: 287 FTEVVETDDFKNLSTSQVIDILLRDDLKV 315


>SB_26785| Best HMM Match : Mod_r (HMM E-Value=2)
          Length = 159

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +3

Query: 147 SRGIITLWNMDSDDRHSFRSERRKLQATQHSF--HITEE---AKHTYRRLXETHKRRLGS 311
           SR +++L   D  DRH    E RKL + +     H+  E   ++HT +RL E  KR+   
Sbjct: 38  SRKLLSL--EDKKDRHMELEESRKLLSLEDKKDRHMERERIRSQHTKKRLKEKRKRKEQK 95

Query: 312 GD 317
           G+
Sbjct: 96  GE 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,326,160
Number of Sequences: 59808
Number of extensions: 345739
Number of successful extensions: 1174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)