Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F06
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.29 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.38 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.67 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 177 DSDDRHSFRSERRKLQATQHSFHITEEAKHTYRRLXETHKRRLGSGD 317
           D   R  F + +R    T  S  I E+ +  YR +   HK+R    D
Sbjct: 116 DETIRPVFSTLQRAEYPTNRSLFIREQTEEMYREMLLEHKKRRARRD 162


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 262 NTLIDGXQKLTNVVWDPATSAVSLTSRNYVFLDNDFVVYQDFRNTLQRDFGASXKVLDFD 441
           N L+ G Q +  V  D  +++     + Y+F D D  +  + +N  + DFG S +  + D
Sbjct: 16  NVLLHG-QVICFVCKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVD 74

Query: 442 D 444
           +
Sbjct: 75  E 75


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 175 WTLMTGIALGASG 213
           WTLM  IAL ASG
Sbjct: 4   WTLMAAIALAASG 16


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 457 VPNSDRRNLTLXSMHRNLSAAYS 389
           + N DRR      MH+ + A Y+
Sbjct: 224 IVNKDRRGELFYYMHQQIMARYN 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,884
Number of Sequences: 438
Number of extensions: 3153
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)