Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F06
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    38   0.003
At5g05330.1 68418.m00574 hypothetical protein                          32   0.29 
At4g09970.1 68417.m01633 expressed protein                             29   2.7  
At3g30210.1 68416.m03811 myb family transcription factor (MYB121...    28   3.6  
At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family pr...    28   3.6  
At1g50040.1 68414.m05615 expressed protein                             28   3.6  
At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putati...    28   4.7  
At5g08590.1 68418.m01022 serine/threonine protein kinase (ASK2) ...    27   8.3  

>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
 Frame = +1

Query: 130 TITNGGHVVLSPFGIWTLMTGIALGASGESYRQLSTAFILPKKQNTLIDGXQKLTNVVWD 309
           T+ NG ++V SP  I  L+  IA G++  +  Q+ +  +LP   + L     K  +V  +
Sbjct: 24  TVANGSNLVFSPMSINVLLCLIAAGSNCVTKEQILSFIMLP-SSDYLNAVLAKTVSVALN 82

Query: 310 PA--TSAVSLTSRNYVFLDNDFVVYQDFRNTLQRDFGASXKVLDFDDPNSARI--ANTYI 477
                S + L++   V++D        F++ L+  + A+   +DF    +  I   N + 
Sbjct: 83  DGMERSDLHLSTAYGVWIDKSLSFKPSFKDLLENSYNATCNQVDFATKPAEVINEVNAWA 142

Query: 478 ENSGGGRVSNVLRSD 522
           E    G +  +L  D
Sbjct: 143 EVHTNGLIKEILSDD 157


>At5g05330.1 68418.m00574 hypothetical protein 
          Length = 221

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 147 SRGIITLW-NMDSDDRHSFRSERRKLQATQHSFHITEEAKHTYRRLXETHKRRLGSGDK 320
           SR    +W NM ++D+  F +   ++ +  HS  + EEAK  Y+   E   + +G  DK
Sbjct: 131 SRICFNVWKNMSAEDQKPFNARAMEVDSA-HSRKLNEEAKTIYKADEEADSKTVGRYDK 188


>At4g09970.1 68417.m01633 expressed protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 129 HNHKRWSRGIITLWNMD-SDDRHSFRSERRKLQATQHSFHITEEAKHTYRRLXETHKRRL 305
           H  +RW   ++  WN   + D H   S   ++ +T      T+E    Y R+   +KR L
Sbjct: 184 HGSERWRTALMD-WNEPLASDGHDSMSPEYRVASTNQEATATDEMNEAYSRVELEYKRFL 242


>At3g30210.1 68416.m03811 myb family transcription factor (MYB121)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain (2 copies)
          Length = 276

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 123 TTHNHKRWSRGII--TLWNMDSDDRHSF 200
           T+ +H     G +  +LWN+D DD HSF
Sbjct: 206 TSSDHSMIDEGHLWGSLWNLDEDDPHSF 233


>At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 736

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 349 VFLDNDFVVYQDFRNTLQRDFGASXKVLDFDDPNSARIANTYI 477
           V+LD DF+V + F+  L+   GA   V++ D  N  R+ N  +
Sbjct: 209 VYLDTDFIVTRSFKG-LKNSIGAQT-VVEGDSKNWTRLNNAVL 249


>At1g50040.1 68414.m05615 expressed protein
          Length = 460

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 59  GTCYCDVDFNDRPRNF-SIELLYHTQSQT 142
           G CYC + F   PR   S+ +L  T+S++
Sbjct: 42  GNCYCKIKFKSFPRQIVSVPVLLRTESES 70


>At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putative
           / HD-ZIP transcription factor, putative similar to
           homeodomain leucine zipper protein GI:5006851 from
           [Oryza sativa]
          Length = 206

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 126 THNHKRWSRGIITLWNMDSDDRHSFRSERRKLQATQHSFHITEEAKHTYRRLXETHKRRL 305
           T   + W  G     +++ DD +S    R+KL+ T+   H+ EE+      L    K+ L
Sbjct: 42  TEEDREWMIGATP--HVNEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDL 99

Query: 306 GSGDKCS 326
            +  K S
Sbjct: 100 ATFLKLS 106


>At5g08590.1 68418.m01022 serine/threonine protein kinase (ASK2)
           identical to serine/threonine-protein kinase ASK2,
           SWISS-PROT: P43292; contains protein kinase domain,
           Pfam:PF00069
          Length = 353

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 177 DSDDRHSFRSERRKLQATQHSF----HITEEAKHTYRRLXETHKRR 302
           D +D  +FR   +++ A Q+      HI++E KH   R+  T+  +
Sbjct: 202 DPNDPKNFRKTIQRIMAVQYKIPDYVHISQECKHLLSRIFVTNSAK 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,700,751
Number of Sequences: 28952
Number of extensions: 232251
Number of successful extensions: 667
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)