Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F05
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    77   3e-15
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    59   4e-10
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    36   0.005
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    28   1.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.8  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.8  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 38/47 (80%), Positives = 41/47 (87%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTKQ*TNL 142
           GDAGVRGTAQQPRLFV MILILIFAEVLGLYGLIVA+ L T+   N+
Sbjct: 113 GDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLLNTRATDNV 159


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
           GD GV+   +Q R+FV M+LILIFAEVLGLYGLIV + L TK
Sbjct: 115 GDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIVGLILQTK 156


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
           G +     AQ   LFV ++++ IF  VLGL+GLIV + +
Sbjct: 153 GSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLLI 191



 Score = 31.5 bits (68), Expect = 0.10
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
           G + + G  + PR+    ++ +IF EV+ +Y LI+AI    K
Sbjct: 69  GTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSAK 110


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
 Frame = +2

Query: 143 NTLNSSRRCSGFLYDENLINLRSVTMRAQGQASPGSNHYIPRIGLRSTN**HIVYYSNLV 322
           NT    ++     Y + ++  R+ +M      +   NH +PR   RST+        N +
Sbjct: 275 NTFFPPKQSMNIFYQKAILEARATSMDTTILGNFTENHDVPRFLNRSTD---YSLLCNTL 331

Query: 323 TIKIYI--IPHI-SGPV*PGCCGH-TEPRDAIYTNEY------FYFIKRI 442
           T+ ++   IP I  G       GH  E RDA++T+ Y      F F+K++
Sbjct: 332 TLLLFTDGIPIIFQGQEQMYAGGHDPENRDALWTSNYNQQNPIFQFLKKL 381


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 93  TGSSSPFTCTRSSKPT*THSTPVAGAPDSYTTRILS 200
           + SS+P T   S+  T   STP+  A  + +T + S
Sbjct: 369 SASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSS 404



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 93  TGSSSPFTCTRSSKPT*THSTPVAGAPDSYTTRILS 200
           + SS+P T   S+  T   STP+  A  + +T + S
Sbjct: 483 SASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSS 518


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 528 YSQTSRGSVNAFKKYHDYSGFDEKRKKIVILFI 430
           +S TSR  + + K+++  S  D +R++ + LF+
Sbjct: 507 WSSTSRDLIESVKRFYSNSFVDFQRQEAISLFL 539


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 99  SPYRPNTSAKMRIRIIPTNNLGCWAVPRTP 10
           S Y+P++S+K+  + +     G  A+P+ P
Sbjct: 401 SSYKPSSSSKVSAKSVSRKPTGAPAIPKLP 430


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 53  MILILIFAEVLGLYGLIVAIYLYT 124
           ++++ +   V GL G IVA Y+YT
Sbjct: 358 VLVLQMITMVTGLLGAIVATYIYT 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,755
Number of Sequences: 5004
Number of extensions: 53644
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)