Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F05
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0267 + 42410174-42410252,42410679-42411097 69 3e-12
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 66 2e-11
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 66 2e-11
05_01_0043 - 295041-295173,296252-296537,296616-296697 66 2e-11
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 56 2e-08
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 33 0.19
08_02_0184 + 13947739-13947930,13948289-13948465,13948546-139486... 29 2.3
07_03_0281 - 16221526-16221624,16221935-16221986,16222071-162221... 28 5.3
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668... 28 5.3
07_01_0383 - 2856777-2858042,2858238-2858270,2858607-2858742,286... 27 9.2
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 68.9 bits (161), Expect = 3e-12
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
GDAGVR AQQP+LFVGMILILIFAE LGLYGLIV I L ++
Sbjct: 117 GDAGVRANAQQPKLFVGMILILIFAEALGLYGLIVGIILSSR 158
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYLYT 124
+P L + I+ ++ A VLG+YGLI+A+ + T
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVIITT 78
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
GDAGVR AQQP+LFVGMILILIFAE L LYGLIV I L ++
Sbjct: 117 GDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYLYT 124
+P L + I+ ++ A VLG+YGLI+A+ + T
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
GDAGVR AQQP+LFVGMILILIFAE L LYGLIV I L ++
Sbjct: 117 GDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYLYT 124
+P L + I+ ++ A VLG+YGLI+A+ + T
Sbjct: 48 RPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
GDAGVR AQQP+LFVGMILILIFAE L LYGLIV I L ++
Sbjct: 118 GDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 159
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYLYT 124
+P L + I+ ++ A VLG+YGLI+A+ + T
Sbjct: 49 RPELVMKSIVPVVMAGVLGIYGLIIAVIIST 79
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +2
Query: 14 VRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
+R AQQP+LFVGMILILIFAE L LYGLIV I L ++
Sbjct: 155 LRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 192
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 32 QPRLFVGMILILIFAEVLGLYGLIVAIYLYT 124
+P L + I+ ++ A VLG+YGLI+A+ + T
Sbjct: 50 RPELVMKSIVPVVMAGVLGIYGLIIAVIIST 80
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
G + + + PR+ ++ +IF E + +YG+IVAI L TK
Sbjct: 44 GSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTK 85
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 2 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
G + AQ LFV +++I IF LGL+G+IV I +
Sbjct: 128 GSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIM 166
>08_02_0184 +
13947739-13947930,13948289-13948465,13948546-13948665,
13948709-13948753,13948848-13949012,13949324-13949402,
13949552-13949631,13950548-13950616,13950948-13951031
Length = 336
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = -3
Query: 391 LGVTAASRLHRARDMRNYINLNCYKITIIHNMLLISTPESYAGYIVIATGRRLSLCAHCD 212
LG+TA +H R+M +N++ ++ I+N S ++V + ++ L H D
Sbjct: 226 LGMTALIEVHDEREMERVLNISGVQLIGINN-------RSLETFVVDTSNTKMLLDMHGD 278
Query: 211 *AEIDKILVV*ESG 170
ILVV ESG
Sbjct: 279 TIREKGILVVGESG 292
>07_03_0281 -
16221526-16221624,16221935-16221986,16222071-16222165,
16222347-16222398,16222483-16222611,16222748-16222812
Length = 163
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 137 NLNTLNSSRRCSGFLYDENLINLRSVTM-RAQGQASPGSNHYIPR 268
N+N + R C+ Y I++ ++ M G+ P HYIPR
Sbjct: 93 NINVYDKIRVCTHPWYTALQISMNALVMVELDGETDPLEGHYIPR 137
>04_04_0803 -
28165828-28166136,28166257-28166505,28166628-28166889,
28168116-28168204,28168286-28168342,28168443-28168595
Length = 372
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 189 SSYRNPEHRRLELSVFRLVYCFVYR*MATMSPYRPNTS 76
S+Y NPE ++ L V +V C+ + +S PNTS
Sbjct: 45 SAYNNPEEQKFVLGVILMVPCYAIE--SYVSLINPNTS 80
>07_01_0383 -
2856777-2858042,2858238-2858270,2858607-2858742,
2860778-2860890
Length = 515
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 228 CARIVTERRLIRFSSYRNPEHR 163
CA+ VT R +R SS+++P H+
Sbjct: 103 CAKSVTSMRRVRVSSHQSPVHK 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,539,988
Number of Sequences: 37544
Number of extensions: 341467
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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