Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F05
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)                   29   4.1  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)                  27   9.4  
SB_20626| Best HMM Match : DSL (HMM E-Value=2.2e-19)                   27   9.4  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 39/42 (92%), Positives = 40/42 (95%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
           GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 113 GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILTTK 154


>SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 210 ERRLIRFSSYRNPEHRRLELSVFRLVYCFV 121
           E ++I+F SYR P  +   LS  R+VY FV
Sbjct: 14  ESKVIKFRSYRLPGVKEFGLSDHRMVYAFV 43


>SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 564 IVDNKTVINKLNYSQTSRGSVNAFKKYHDYSGFDEKRKKIVI 439
           +VD+ T+INKL+    S  S+N FK Y      +++++K+ I
Sbjct: 33  LVDHDTLINKLSIYGVSGKSLNWFKSY-----LEDRKQKVTI 69


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +1

Query: 7   CRRTWYGPTAQV--IRRNDPYPHF 72
           C R WYG T  V  + RND   HF
Sbjct: 498 CHREWYGATCDVHCVPRNDSSGHF 521


>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
          Length = 659

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 150 STPVAGAPDSYTTRILSISAQSQCAHRDRRRPVAI 254
           ST +     ++T R L  +A  +C++ D+R P+++
Sbjct: 609 STMLPSTQPNHTLRALEPTASRRCSYEDKRVPISV 643


>SB_20626| Best HMM Match : DSL (HMM E-Value=2.2e-19)
          Length = 323

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 7   CRRTWYGPTAQVIRRNDPYP 66
           CRR W GP+  VI RN P P
Sbjct: 94  CRRGWTGPSCDVILRN-PTP 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,698,842
Number of Sequences: 59808
Number of extensions: 427688
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)