Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F05
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29095-3|CAA82355.1|  161|Caenorhabditis elegans Hypothetical pr...    75   3e-14
AC024762-4|AAF59473.1|  161|Caenorhabditis elegans Vacuolar h at...    75   3e-14
AB009566-1|BAA75066.1|  161|Caenorhabditis elegans Vha3 protein ...    75   3e-14
AB000918-1|BAA22596.1|  161|Caenorhabditis elegans VHA-2 protein.      75   3e-14
Z29095-6|CAA82354.1|  169|Caenorhabditis elegans Hypothetical pr...    69   3e-12
AB000917-1|BAA22595.1|  169|Caenorhabditis elegans VHA-1 protein.      69   3e-12
Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical pr...    35   0.041
AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.      35   0.041
AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear horm...    29   2.7  
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    29   3.6  

>Z29095-3|CAA82355.1|  161|Caenorhabditis elegans Hypothetical
           protein R10E11.2 protein.
          Length = 161

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 124
           GDAGVRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L T
Sbjct: 120 GDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 32  QPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
           +P L +  ++ +I A ++G+YGL+VA+ L  K
Sbjct: 51  RPELIMKSVIPVIMAGIIGIYGLVVAMVLKGK 82


>AC024762-4|AAF59473.1|  161|Caenorhabditis elegans Vacuolar h
           atpase protein 3 protein.
          Length = 161

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 124
           GDAGVRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L T
Sbjct: 120 GDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 32  QPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
           +P L +  ++ +I A ++G+YGL+VA+ L  K
Sbjct: 51  RPELIMKSVIPVIMAGIIGIYGLVVAMVLKGK 82


>AB009566-1|BAA75066.1|  161|Caenorhabditis elegans Vha3 protein
           protein.
          Length = 161

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 124
           GDAGVRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L T
Sbjct: 120 GDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 32  QPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
           +P L +  ++ +I A ++G+YGL+VA+ L  K
Sbjct: 51  RPELIMKSVIPVIMAGIIGIYGLVVAMVLKGK 82


>AB000918-1|BAA22596.1|  161|Caenorhabditis elegans VHA-2 protein.
          Length = 161

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 124
           GDAGVRGTAQQPRLFVGMILILIF+EVLGLYG+IVA+ L T
Sbjct: 120 GDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 32  QPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 127
           +P L +  ++ +I A ++G+YGL+VA+ L  K
Sbjct: 51  RPELIMKSVIPVIMAGIIGIYGLVVAMVLKGK 82


>Z29095-6|CAA82354.1|  169|Caenorhabditis elegans Hypothetical
           protein R10E11.8 protein.
          Length = 169

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 32/39 (82%), Positives = 36/39 (92%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
           GDAGVR  +QQPR+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 128 GDAGVRALSQQPRMFVGMILILIFAEVLGLYGMIVALIL 166


>AB000917-1|BAA22595.1|  169|Caenorhabditis elegans VHA-1 protein.
          Length = 169

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 32/39 (82%), Positives = 36/39 (92%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 118
           GDAGVR  +QQPR+FVGMILILIFAEVLGLYG+IVA+ L
Sbjct: 128 GDAGVRALSQQPRMFVGMILILIFAEVLGLYGMIVALIL 166


>Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical
           protein T01H3.1 protein.
          Length = 214

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 112
           G       A  P LFV +++I IFA  +GL+G+I+ I
Sbjct: 167 GSGAAIADAANPALFVKILIIEIFASAIGLFGMIIGI 203


>AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.
          Length = 214

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 2   GDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 112
           G       A  P LFV +++I IFA  +GL+G+I+ I
Sbjct: 167 GSGAAIADAANPALFVKILIIEIFASAIGLFGMIIGI 203


>AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 122 protein.
          Length = 374

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 418 VFLFYKEDHNFFSFFIESRII 480
           +++  K+DH+FF +F+ES+ I
Sbjct: 354 MYIMNKQDHSFFKYFVESKRI 374


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/31 (32%), Positives = 23/31 (74%)
 Frame = +2

Query: 59  LILIFAEVLGLYGLIVAIYLYTKQ*TNLNTL 151
           +I++   ++G++G I++IY+Y++   N NT+
Sbjct: 24  MIMLPLILIGIFGNIISIYVYSRHHMNKNTI 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,169
Number of Sequences: 27780
Number of extensions: 304612
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)