Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F03
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           30   1.1  
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740...    27   5.8  
03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349...    27   7.7  

>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 239 RTFGTLQKHCGTSHSPDGGSISWTVGLSHDGSACCGQYNTECSPAGHFLIGFL 81
           ++F +L K CG  HSP  G ++  +  +   +A          P G F  G L
Sbjct: 143 KSFASLPKDCGGGHSPRPGELAKAMSCAAAATATASAAGGMSVPCGVFFYGDL 195


>04_04_1060 -
           30473509-30473619,30473815-30473850,30474063-30474095,
           30474246-30474335,30474466-30475215
          Length = 339

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +2

Query: 95  ENARLVNTQCCTAHNKQSRHVTTLPSMRWTHHQGCATYRSA-----SATYRTFETLKPES 259
           ++AR   T CCT H   S+H+      + TH    A   ++     S  +R   T  P+ 
Sbjct: 27  DSARHKATNCCTRHGCSSKHLA--GKDKQTHRAATAAKEASETPRRSQIFRKPSTRTPQG 84

Query: 260 ASNCQNVKYN 289
           ++   N+  N
Sbjct: 85  STATDNISRN 94


>03_01_0456 -
           3495537-3496205,3496304-3496364,3496447-3496829,
           3496924-3497613
          Length = 600

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 245 RFRTFGTLQKHCGTSHSPDGGSISWTVGLSHDGSA 141
           RF ++G +    G     DGGS+S T+GL H  +A
Sbjct: 525 RFVSYGDMAD-LGGGGGYDGGSVSLTLGLQHCNNA 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,492,182
Number of Sequences: 37544
Number of extensions: 215760
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)