Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F03
(474 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01) 31 0.65
SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_5073| Best HMM Match : Rhomboid (HMM E-Value=3.3) 29 1.5
SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25) 29 2.6
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 28 3.4
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_1808| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05) 27 7.9
SB_3037| Best HMM Match : Homeobox (HMM E-Value=4.3e-27) 27 7.9
SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077) 27 7.9
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
Length = 738
Score = 30.7 bits (66), Expect = 0.65
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 74 YGQGIL*ENARLVNTQCCTAHNKQSRHVTTLPSMRWTHHQGCATYRSASAT 226
Y GI A L+ N +H RWT H+G A Y ++ T
Sbjct: 67 YATGIFSRYANLLTNTTRDDMNAAHQHFQEAHQYRWTRHEGAAGYENSGLT 117
>SB_55961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -2
Query: 230 GTLQKHCGTSHSPD-----GGSISWTVGLSHDGSACCGQYNTECS 111
GT + G S+ P GG + W V + D +C GQ NT CS
Sbjct: 32 GTNRLRNGNSYLPSHCNCPGGRVLWNVTKTEDSKSCIGQLNT-CS 75
>SB_5073| Best HMM Match : Rhomboid (HMM E-Value=3.3)
Length = 188
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 244 GFERSVRCRSTAVRRTALMVGPSHGR*GCHMTALLVV 134
GF +S RC++TA + A + S G G M L+VV
Sbjct: 58 GFSQSRRCKTTASAKLACLQVDSRGSPGAMMAMLVVV 94
>SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)
Length = 854
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 66 SPSTVKESYKKMPGW*TLSVVLPTTSRA 149
SPS K+ + +MP W L+ +LPTT A
Sbjct: 106 SPSWPKKLFSRMPSW--LTFILPTTDAA 131
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Frame = +1
Query: 70 HLRSRNP----IRKCPAGEHSVLYCPQQAE 147
HLRS+ P KC +G+H VL C Q E
Sbjct: 684 HLRSKCPSTRLCSKCQSGDHHVLLCKAQKE 713
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 212 CGTSHSPDGGSISWTVGLSHD 150
CGTSH G ISW L D
Sbjct: 230 CGTSHESTGNFISWLKSLPQD 250
>SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 209 GTSHSPDGGSISWTVGLSHDGSACCGQYNTECSPAGHFLIGFLDR 75
G SP G + TV + G+ C + N GHFL+ LD+
Sbjct: 351 GRQPSPIEGRVRRTVCFNWAGNCCKWRQNILVRNCGHFLVYELDK 395
>SB_1808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 244 GFERSVRCRSTAVRRTALMVGPSHGR*GCHM 152
GF +S RC++TA + A + S G GC +
Sbjct: 36 GFSQSRRCKTTASAKLACLQVDSRGSPGCKL 66
>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
Length = 1154
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +2
Query: 95 ENARLVNTQCCTAHNKQSRHVTTLPSMRWTHHQGCA-TYRSASATYRTFETLKPE 256
E R +NT T H + H L S R T H TYR + T LK E
Sbjct: 734 ETYRYLNTNRTTIHALKGEHYHYLNSNRKTIHASKGETYRYLNTNRTTIHALKGE 788
>SB_3037| Best HMM Match : Homeobox (HMM E-Value=4.3e-27)
Length = 308
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 64 SHHLRSRNPIRKCPAGEHSVLYCPQQAEPSCDNPTVH 174
SHH ++PI+ P H +L+ + + SCD P ++
Sbjct: 135 SHHPYLQSPIQPYPGSAHELLH---EDKSSCDEPRLN 168
>SB_55413| Best HMM Match : LRR_1 (HMM E-Value=0.00077)
Length = 359
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 143 QSRHVTTLPSMRWTHHQGCATYRSASATYRTFETLKPESASNCQNVKY 286
+ R V +R GCA R + + +LK S SNC+ V Y
Sbjct: 42 EGRSVRASSLLRQLAKGGCAARRLSWMLVKQCSSLKTLSLSNCEKVTY 89
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Frame = +1
Query: 94 RKCPAGEHSVLYCPQQAEPSCDNPTVHEMDPPSGLCDVP----QCFCNVPNVRNLKTGKC 261
R CP ++ + C C P PP +C+VP Q +C P N ++ C
Sbjct: 952 RDCP---NNFMCCDSGCYKQCVKPNQVFTMPPFSICEVPMRSGQIYCVCPECDNTESPVC 1008
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,606,415
Number of Sequences: 59808
Number of extensions: 269358
Number of successful extensions: 892
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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