Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F03
         (474 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei...    29   2.1  
At1g63370.1 68414.m07164 flavin-containing monooxygenase family ...    27   4.9  
At1g62620.1 68414.m07065 flavin-containing monooxygenase family ...    27   4.9  
At4g15250.1 68417.m02337 zinc finger (B-box type) family protein       27   6.5  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   8.6  
At3g01311.1 68416.m00043 hypothetical protein                          27   8.6  

>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 455

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +1

Query: 46  NCVGYGSHHLRSRNPIRKCPAGEHSVLYCPQQAE-PSCD 159
           NC G G  +  S    R+C    H  L  P   E PSCD
Sbjct: 381 NCTGCGYMNFASNKQCRECREQRHKTLAEPGDWECPSCD 419


>At1g63370.1 68414.m07164 flavin-containing monooxygenase family
           protein / FMO family protein similar to FMO5 from Cavia
           porcellus [SP|P49109]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like
          Length = 450

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 179 WTHHQGCATYRSASATYRTFETLKPESASNCQNVKYNF 292
           WTH    + +   S  Y+  +T+  +   +C   KY+F
Sbjct: 256 WTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHF 293


>At1g62620.1 68414.m07065 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase 3 (FMO3) from Rattus
           norvegicus [GI:12006730], FMO1 from Canis familiaris]
           [GI:15420722], FMO1 from Homo sapiens [SP|Q01740];
           contains Pfam profile: PF00743 Flavin-binding
           monooxygenase-like
          Length = 450

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 179 WTHHQGCATYRSASATYRTFETLKPESASNCQNVKYNF 292
           WTH    + +   S  Y+  +T+  +   +C   KY+F
Sbjct: 256 WTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHF 293


>At4g15250.1 68417.m02337 zinc finger (B-box type) family protein
          Length = 330

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 46  NCVGYGSHHLRSRNPIRKCPA 108
           NC G G H L+S NP   CP+
Sbjct: 77  NCTGLG-HRLQSLNPYSDCPS 96


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
           identical to auxin transport protein; BIG [Arabidopsis
           thaliana] GI:21779966; contains Pfam profiles PF02207:
           Putative zinc finger in N-recognin, PF00569: Zinc finger
           ZZ type
          Length = 5098

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 169 VHEMDPPSGLCDVPQ 213
           +H++D P+G+CD PQ
Sbjct: 749 LHKVDTPAGICDGPQ 763


>At3g01311.1 68416.m00043 hypothetical protein
          Length = 292

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 56  PTQLGTRLTSFFILTTL 6
           P+  GT+LTSFFI+T +
Sbjct: 262 PSSCGTKLTSFFIVTII 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,628,220
Number of Sequences: 28952
Number of extensions: 173732
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)