Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F01
         (160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   0.77 
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   1.0  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    24   3.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    24   3.1  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    23   4.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    23   4.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    23   7.2  
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    22   9.5  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    22   9.5  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    22   9.5  

>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 30  YQMFPGDHYT---WQSPLLLRTKVKKARARTYYYADFQRHWGISPQ 158
           ++ +P  H+      S L L  ++  +R  +YY+ D Q  + +SPQ
Sbjct: 100 HEKYPDVHFARVYLSSSLELSVRLLISRIPSYYFIDNQNFYRVSPQ 145


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +3

Query: 15  LLMDHYQMF----PGDHYTWQSPLLLRTKVKKARARTYYY 122
           LL+ HY+ F     GD  TW+     + +  + R RTY +
Sbjct: 534 LLLRHYEWFRETQKGDFETWERECFSQVEGYRWRGRTYQH 573


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 65  VAAIAAHKSQKSSGEDLLLCRLSATLGH 148
           VAA  A  S+ SS  DL +  LS  +GH
Sbjct: 493 VAAFVAPYSEHSSFYDLTMFCLSMNIGH 520


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 77  AAHKSQKSSGEDLLLCRLSATLG 145
           A+H  ++  GEDL  C  S   G
Sbjct: 423 ASHAEEEEEGEDLCNCEFSLAYG 445


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 97  KLGRGPITMPTFSDIGAF 150
           K+G+G +   TF D+G F
Sbjct: 43  KIGKGDLRFGTFVDVGKF 60


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 14   TTNGSLPDVSR*SLHLAVAAIAAHKSQKSSGEDLLLCRLSATLGHFST 157
            T N  L D++  S   A+   A H +  +  E LL+C  + + G F T
Sbjct: 965  TLNYQLKDINPRSS--ALGEYALHVTYTTVEEHLLICNWNDSYGEFET 1010


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 118 TMPTFSDIGAFLH 156
           T+P ++D+ +FLH
Sbjct: 693 TLPNYTDVASFLH 705


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 34 RCFPVIITPGSRR 72
          RC+PV + PG  R
Sbjct: 37 RCYPVAMIPGEER 49


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = +1

Query: 28  ITRCFPVIITPGSRRYCCAQKSKKLGRGPIT-MPTFSDI 141
           I +C    I P    Y C     KLG    T M +F  +
Sbjct: 483 IDQCLDATIQPDQMEYTCEACKSKLGATTTTAMKSFPKV 521


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 43  PVIITPGSRRYCCAQKSKKLGRGPITM 123
           P II+ G     CA  +KKL RG + M
Sbjct: 422 PFIISLGWTTASCAGYTKKLTRGVMFM 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,965
Number of Sequences: 5004
Number of extensions: 10477
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)