Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F01
         (160 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0613 + 5383911-5383970,5384234-5384350,5384674-5384886           27   2.1  
12_01_0393 - 3100230-3100714,3100973-3101097,3101271-3101399,310...    26   4.8  
12_01_0391 - 3086802-3087292,3089198-3089322,3089421-3089633,308...    26   4.8  
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    25   6.3  
04_04_0357 - 24663305-24663711,24664179-24664461                       25   8.3  

>08_01_0613 + 5383911-5383970,5384234-5384350,5384674-5384886
          Length = 129

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 2   LSAMTTNGSLPDVSR*SLHLAVAAIAAHKSQKSSGEDLLLCRLSATL 142
           ++A  TN S     + + HL+  +++AH  QK   E+ LLCR +A L
Sbjct: 65  MAASGTNRSKLTRDKLTPHLSDLSLSAHSLQKGE-ENNLLCRNAAAL 110


>12_01_0393 -
           3100230-3100714,3100973-3101097,3101271-3101399,
           3102480-3102508
          Length = 255

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 3   YPP*LLMDHYQMFPGDHYTW 62
           +P  +L   YQ F G HY W
Sbjct: 84  FPSTMLPKQYQAFQGKHYLW 103


>12_01_0391 -
           3086802-3087292,3089198-3089322,3089421-3089633,
           3089726-3090711
          Length = 604

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 3   YPP*LLMDHYQMFPGDHYTW 62
           +P  LL + Y+ F G HY W
Sbjct: 431 FPSTLLPEKYRTFQGKHYLW 450


>04_03_0658 +
           18447986-18448117,18448204-18448317,18448388-18448507,
           18448589-18449215,18449289-18449462,18449545-18449809,
           18449889-18449959,18450043-18450145,18450221-18450280,
           18450533-18450744,18450830-18450901,18451446-18451502,
           18451598-18451882,18452359-18452371,18452396-18452463,
           18452649-18452747,18452836-18452967,18453038-18453141,
           18453234-18453423,18453519-18453524
          Length = 967

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 65  VAAIAAHKSQKSSGEDLLLCRLSATLGHFS 154
           +A    ++S +S G  +LLC +S ++GH+S
Sbjct: 706 IAPEICNESYRSLGR-VLLCNMSKSIGHYS 734


>04_04_0357 - 24663305-24663711,24664179-24664461
          Length = 229

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 105 ARTYYYADFQRHWGISP 155
           AR  YY D+ R +G+SP
Sbjct: 207 ARVNYYKDYCRQFGVSP 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,979,419
Number of Sequences: 37544
Number of extensions: 77789
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 33
effective length of database: 13,554,396
effective search space used: 257533524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)