Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F01
         (160 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ...    27   1.3  
At2g18850.1 68415.m02196 SET domain-containing protein low simil...    25   6.8  
At3g01080.1 68416.m00011 WRKY family transcription factor simila...    25   9.0  

>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
           protein Mei2-like protein - Arabidopsis thaliana,
           EMBL:D86122
          Length = 907

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 2   LSAMTTNGSLPDVSR*SLHLAVAAIAAHKSQKSSGEDLLLCRLSATLG 145
           + A T    LPD     L   V     HKS+ + G+DL  C L +++G
Sbjct: 129 MEAQTIGNLLPDED--DLFAEVVGEGVHKSRANGGDDLDDCDLFSSVG 174


>At2g18850.1 68415.m02196 SET domain-containing protein low
           similarity to ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit N-methyltransferase
           I [Spinacia oleracea] GI:3403236; contains Pfam profile
           PF00856: SET domain
          Length = 448

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 15  LLMDHYQMFPGDHYTWQ 65
           LL +H ++FP + YTW+
Sbjct: 291 LLSNHREVFPPELYTWE 307


>At3g01080.1 68416.m00011 WRKY family transcription factor similar
           to NtWRKY1 transcription factor GB:BAA82107 from
           [Nicotiana tabacum]
          Length = 423

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 21  MDHYQMFPGDHYTWQSPLLLRTKVKK 98
           M  +  F  ++ T QSP+LLR K +K
Sbjct: 395 MQQHMSFGNNNNTGQSPVLLRLKEEK 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,837,315
Number of Sequences: 28952
Number of extensions: 57536
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 12,070,560
effective HSP length: 33
effective length of database: 11,115,144
effective search space used: 211187736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)