Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_E24
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0114 - 857835-859464,860403-860444,860530-860537                 29   2.7  

>02_01_0114 - 857835-859464,860403-860444,860530-860537
          Length = 559

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 196 LPSQVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNLSI 71
           + S V WT+L    V   QP+ +  + G M +E   P +++I
Sbjct: 227 MKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITI 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,389
Number of Sequences: 37544
Number of extensions: 290483
Number of successful extensions: 650
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)